View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14296_low_20 (Length: 225)

Name: NF14296_low_20
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14296_low_20
NF14296_low_20
[»] chr5 (14 HSPs)
chr5 (67-161)||(14169139-14169230)
chr5 (67-161)||(14169324-14169415)
chr5 (187-225)||(13042613-13042651)
chr5 (185-225)||(41170708-41170748)
chr5 (157-220)||(41340358-41340419)
chr5 (187-225)||(6500524-6500562)
chr5 (187-225)||(6500896-6500934)
chr5 (187-225)||(13112611-13112649)
chr5 (187-225)||(26074686-26074724)
chr5 (192-225)||(18603171-18603204)
chr5 (187-224)||(26074192-26074229)
chr5 (192-225)||(32487467-32487500)
chr5 (184-225)||(34103628-34103669)
chr5 (177-217)||(5963765-5963805)
[»] chr3 (9 HSPs)
chr3 (187-225)||(22304001-22304039)
chr3 (185-225)||(22303703-22303743)
chr3 (187-225)||(3135500-3135538)
chr3 (187-225)||(53118021-53118059)
chr3 (187-225)||(54017594-54017632)
chr3 (192-225)||(52634749-52634782)
chr3 (177-225)||(16868419-16868467)
chr3 (177-225)||(16870995-16871043)
chr3 (193-225)||(32589777-32589809)
[»] chr7 (8 HSPs)
chr7 (157-225)||(48071460-48071526)
chr7 (187-225)||(7517654-7517692)
chr7 (187-221)||(11845269-11845303)
chr7 (187-225)||(30244344-30244382)
chr7 (192-225)||(1085667-1085700)
chr7 (192-225)||(22566713-22566746)
chr7 (192-225)||(23569053-23569086)
chr7 (185-225)||(1085292-1085332)
[»] chr6 (10 HSPs)
chr6 (184-221)||(21130100-21130137)
chr6 (157-225)||(22605273-22605339)
chr6 (187-221)||(1846826-1846860)
chr6 (187-225)||(2377828-2377866)
chr6 (187-225)||(3058300-3058338)
chr6 (187-225)||(16107752-16107790)
chr6 (192-225)||(16454649-16454682)
chr6 (157-225)||(22605038-22605104)
chr6 (192-225)||(32460631-32460664)
chr6 (185-221)||(35210282-35210318)
[»] chr4 (10 HSPs)
chr4 (192-225)||(22183313-22183346)
chr4 (187-225)||(25483410-25483448)
chr4 (187-225)||(41370431-41370469)
chr4 (187-225)||(49302980-49303018)
chr4 (187-225)||(50630799-50630837)
chr4 (187-225)||(54936270-54936308)
chr4 (192-225)||(4955366-4955399)
chr4 (192-225)||(10396490-10396523)
chr4 (192-225)||(44620427-44620460)
chr4 (185-225)||(1731689-1731729)
[»] chr2 (8 HSPs)
chr2 (192-225)||(29874074-29874107)
chr2 (185-225)||(37895105-37895145)
chr2 (187-225)||(36178651-36178689)
chr2 (192-225)||(14745345-14745378)
chr2 (192-225)||(14745718-14745751)
chr2 (192-225)||(15880337-15880370)
chr2 (193-225)||(35580776-35580808)
chr2 (185-225)||(37106262-37106302)
[»] scaffold0702 (1 HSPs)
scaffold0702 (187-225)||(560-598)
[»] scaffold0078 (1 HSPs)
scaffold0078 (187-225)||(5431-5469)
[»] chr8 (4 HSPs)
chr8 (187-225)||(30441159-30441197)
chr8 (192-225)||(3038341-3038374)
chr8 (192-225)||(32640583-32640616)
chr8 (177-225)||(12156694-12156742)
[»] chr1 (3 HSPs)
chr1 (187-225)||(17294651-17294689)
chr1 (187-225)||(29798273-29798311)
chr1 (187-225)||(45494020-45494058)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 14169230 - 14169139
Alignment:
Q  67 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaacaattgaaagcatgcattttaacaaat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||||||    
T  14169230 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatac---acaatggaaagcatgcattttaacaaat 14169139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 14169415 - 14169324
Alignment:
Q  67 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaatatacacaacaattgaaagcatgcattttaacaaat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||||||    
T  14169415 ccaaaaaacaccggggatttaccataagtgtgctttctattaatgtattttgacacaaaaatac---acaatggaaagcatgcattttaacaaat 14169324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 13042651 - 13042613
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  13042651 acaccacactcttatccaaaaccttaaggcaatgggttt 13042613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 41170748 - 41170708
Alignment:
Q  185 aaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  41170748 aaacaccacactcttacccaaaaccttaaggcaatgggttt 41170708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 41340419 - 41340358
Alignment:
Q  157 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatg 220  Q
    |||| |||||||| |||||||||  | ||||||| |||||||||||||||| ||||||||||||    
T  41340419 caaacgtccaagaccataagaga--cttaaacaccacactcttatccaaaatcttaaggcaatg 41340358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 6500562 - 6500524
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  6500562 acaccacactcttacccaaaaccttaaggcaatgggttt 6500524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 6500934 - 6500896
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  6500934 acaccacactcttatccaaaaccttaaggcaatgagttt 6500896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 13112649 - 13112611
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  13112649 acaccacactcttatccaaaaccttaagacaatgggttt 13112611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 26074724 - 26074686
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  26074724 acaccacactcttacccaaaaccttaaggcaatgggttt 26074686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 18603171 - 18603204
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  18603171 acactcttacccaaaaccttaaggcaatgggttt 18603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 26074192 - 26074229
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggtt 224  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  26074192 acaccacactcttacccaaaaccttaaggcaatgggtt 26074229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 32487500 - 32487467
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  32487500 acactcttacccaaaaccttaaggcaatgggttt 32487467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 34103669 - 34103628
Alignment:
Q  184 taaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||| |||||||||| |||||||||||||||||| ||||    
T  34103669 taaacaccacactcttattcaaaaccttaaggcaatgagttt 34103628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 5963805 - 5963765
Alignment:
Q  177 agagacgtaaacactacactcttatccaaaaccttaaggca 217  Q
    |||||| ||||||| ||||||||| ||||||||||||||||    
T  5963805 agagacttaaacaccacactcttacccaaaaccttaaggca 5963765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 22304001 - 22304039
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  22304001 acaccacactcttatccaaaaccttaaggcaatgggttt 22304039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 22303703 - 22303743
Alignment:
Q  185 aaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  22303703 aaacaccacactcttacccaaaaccttaaggcaatgggttt 22303743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 3135500 - 3135538
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  3135500 acaccacactcttatctaaaaccttaaggcaatgggttt 3135538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 53118021 - 53118059
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  53118021 acactacactcttacccaaaatcttaaggcaatgggttt 53118059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 54017594 - 54017632
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  54017594 acaccacactcttacccaaaaccttaaggcaatgggttt 54017632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 52634782 - 52634749
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  52634782 acactcttacccaaaaccttaaggcaatgggttt 52634749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 16868419 - 16868467
Alignment:
Q  177 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||| ||||||  |||||||||||||||| |||||||||||| ||||    
T  16868419 agagacttaaacatcacactcttatccaaaatcttaaggcaatgagttt 16868467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 16870995 - 16871043
Alignment:
Q  177 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||| ||||||| ||||||||| | ||||||||||||||||| ||||    
T  16870995 agagacttaaacacgacactcttacctaaaaccttaaggcaatgagttt 16871043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 32589809 - 32589777
Alignment:
Q  193 cactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||||| ||||||||||||||||||||||||    
T  32589809 cactcttacccaaaaccttaaggcaatgggttt 32589777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 48071526 - 48071460
Alignment:
Q  157 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||||||||||||  | ||||||  ||||||||||||||||||||||| |||| |||||    
T  48071526 caaacgtccaagatcataagaga--cttaaacatcacactcttatccaaaaccttaagacaataggttt 48071460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 7517692 - 7517654
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  7517692 acaccacactcttacccaaaaccttaaggcaatgggttt 7517654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 11845303 - 11845269
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgg 221  Q
    |||| ||||||||||||||||||||||||||||||    
T  11845303 acaccacactcttatccaaaaccttaaggcaatgg 11845269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 30244382 - 30244344
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  30244382 acaccacactcttacccaaaaccttaaggcaatgggttt 30244344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 1085667 - 1085700
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  1085667 acactcttacccaaaaccttaaggcaatgggttt 1085700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 22566713 - 22566746
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  22566713 acactcttacccaaaaccttaaggcaatgggttt 22566746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 23569053 - 23569086
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  23569053 acactcttacccaaaaccttaaggcaatgggttt 23569086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 1085292 - 1085332
Alignment:
Q  185 aaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||| ||||||||| ||||||||||||||||||| ||||    
T  1085292 aaacaccacactcttacccaaaaccttaaggcaatgagttt 1085332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 21130100 - 21130137
Alignment:
Q  184 taaacactacactcttatccaaaaccttaaggcaatgg 221  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  21130100 taaacaccacactcttatccaaaaccttaaggcaatgg 21130137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 22605273 - 22605339
Alignment:
Q  157 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| |||||||| |||||||||  | ||||||| ||| ||||| ||||||||||||||||||||||||    
T  22605273 caaacgtccaagaccataagaga--cttaaacaccacattcttacccaaaaccttaaggcaatgggttt 22605339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 1846860 - 1846826
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgg 221  Q
    |||| ||||||||||||||||||||||||||||||    
T  1846860 acaccacactcttatccaaaaccttaaggcaatgg 1846826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 2377866 - 2377828
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  2377866 acaccacactcttacccaaaaccttaaggcaatgggttt 2377828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 3058338 - 3058300
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  3058338 acaccacactcttacccaaaaccttaaggcaatgggttt 3058300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 16107790 - 16107752
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  16107790 acaccacactcttacccaaaaccttaaggcaatgggttt 16107752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 16454682 - 16454649
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||||||||||||| |||||||||||||||||    
T  16454682 acactcttatccaaaatcttaaggcaatgggttt 16454649  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 22605038 - 22605104
Alignment:
Q  157 caaatgtccaagatcataagagagacgtaaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||||||| ||||||||||   |||||||  ||||||||||||||| ||||||  |||||||||    
T  22605038 caaatgtccaagaccataagagagt--taaacacctcactcttatccaaaagcttaagaaaatgggttt 22605104  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 32460631 - 32460664
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  32460631 acactcttacccaaaaccttaaggcaatgggttt 32460664  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 35210318 - 35210282
Alignment:
Q  185 aaacactacactcttatccaaaaccttaaggcaatgg 221  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  35210318 aaacaccacactcttacccaaaaccttaaggcaatgg 35210282  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 22183313 - 22183346
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||||||||||||||||||||||||||||    
T  22183313 acactcttatccaaaaccttaaggcaatgggttt 22183346  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 25483448 - 25483410
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  25483448 acaccacactcttacccaaaaccttaaggcaatgggttt 25483410  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 41370469 - 41370431
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  41370469 acactacactcttacccaaaactttaaggcaatgggttt 41370431  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 49303018 - 49302980
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  49303018 acaccacactcttacccaaaaccttaaggcaatgggttt 49302980  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 50630799 - 50630837
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  50630799 acaccacactcttacccaaaaccttaaggcaatgggttt 50630837  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 54936308 - 54936270
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  54936308 acaccacactcttacccaaaaccttaaggcaatgggttt 54936270  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 4955366 - 4955399
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  4955366 acactcttacccaaaaccttaaggcaatgggttt 4955399  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 10396523 - 10396490
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||||||||||||||| |||||||||||||||    
T  10396523 acactcttatccaaaaccctaaggcaatgggttt 10396490  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 44620460 - 44620427
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  44620460 acactcttacccaaaaccttaaggcaatgggttt 44620427  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 1731689 - 1731729
Alignment:
Q  185 aaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||| ||||||||| |||||||||||||||||| |||||    
T  1731689 aaacaccacactcttacccaaaaccttaaggcaattggttt 1731729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 29874074 - 29874107
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||||||||||||||||||||||||||||    
T  29874074 acactcttatccaaaaccttaaggcaatgggttt 29874107  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 37895105 - 37895145
Alignment:
Q  185 aaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  37895105 aaacaccacactcttacccaaaaccttaaggcaatgggttt 37895145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 36178651 - 36178689
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  36178651 acaccacactcttacccaaaaccttaaggcaatgggttt 36178689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 14745345 - 14745378
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  14745345 acactcttacccaaaaccttaaggcaatgggttt 14745378  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 14745718 - 14745751
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  14745718 acactcttacccaaaaccttaaggcaatgggttt 14745751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 15880370 - 15880337
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  15880370 acactcttacccaaaaccttaaggcaatgggttt 15880337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 35580776 - 35580808
Alignment:
Q  193 cactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||||| ||||||||||||||||||||||||    
T  35580776 cactcttacccaaaaccttaaggcaatgggttt 35580808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 37106302 - 37106262
Alignment:
Q  185 aaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||| ||||||||| |||||||||||||| |||||||||    
T  37106302 aaacaccacactcttacccaaaaccttaaggaaatgggttt 37106262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 560 - 598
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  560 acaccacactcttacccaaaaccttaaggcaatgggttt 598  T

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Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 5469 - 5431
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  5469 acaccacactcttatccaaaatcttaaggcaatgggttt 5431  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 30441197 - 30441159
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  30441197 acaccacactcttacccaaaaccttaaggcaatgggttt 30441159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 3038341 - 3038374
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  3038341 acactcttacccaaaaccttaaggcaatgggttt 3038374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 32640583 - 32640616
Alignment:
Q  192 acactcttatccaaaaccttaaggcaatgggttt 225  Q
    ||||||||| ||||||||||||||||||||||||    
T  32640583 acactcttacccaaaaccttaaggcaatgggttt 32640616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 12156694 - 12156742
Alignment:
Q  177 agagacgtaaacactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||||| ||||||  ||||||||| ||||||||||||| ||||||||||    
T  12156694 agagacttaaacatcacactcttacccaaaaccttaagacaatgggttt 12156742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 17294689 - 17294651
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  17294689 acaccacactcttacccaaaaccttaaggcaatgggttt 17294651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 29798311 - 29798273
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  29798311 acaccacactcttatccaagaccttaaggcaatgggttt 29798273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 45494020 - 45494058
Alignment:
Q  187 acactacactcttatccaaaaccttaaggcaatgggttt 225  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  45494020 acaccacactcttatccaaaactttaaggcaatgggttt 45494058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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