View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14296_low_6 (Length: 401)
Name: NF14296_low_6
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_low_6 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: scaffold1051 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 2602 - 2205
Alignment:
| Q |
1 |
ttaaattttgtacttaaacaaaaaggggaaaaggaaacaagaaattgaaggttagtttgaggcccaatcattgtttgattctggttgtgctattcttgtt |
100 |
Q |
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| T |
2602 |
ttaaattttgtacttaaacaaaaaggggaaaaggaaacaagaaattgaaggttagtttgtggcccaatcattgtttgattctggttgtgctattcttgtt |
2503 |
T |
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| Q |
101 |
ttatgcaattcttgtattctggtcatggttagttttatgttattcttgtataagtattctttttgcacaatctttgtttgagtggagtaatgcattttac |
200 |
Q |
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| T |
2502 |
ttatgcaattcttgtattctggtcatggttagttttatgttattcttgtataagtattctttttgcacaatctttgtttgagtggagtaatgcattttac |
2403 |
T |
|
| Q |
201 |
aaagtgcattgggaaagagttcatcatatagtagcaaataaggaataatcaagtgagcaaggcaacttaacagattttttgtgtataaataaagtgtgag |
300 |
Q |
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| T |
2402 |
aaagtgcattgggaaagagttcatcatatagtagcaaataaggaataatcaagtgagcaaggcaacttaacagattttttgtgtataaataaagtgtgag |
2303 |
T |
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| Q |
301 |
atagtccaactcaaacgcataagtgcctccacaaaatggcgaagaagagcgaacatcttcctcaagaagtgattaatgaaatcctgatgatgtccatc |
398 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
2302 |
atagtccaactcaaacgcataagtgcctccgcaaaatggcgaagaagagcgaacatcttcctcaagaagtgattaatgaaatcctgttgaggtccatc |
2205 |
T |
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