View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14296_low_7 (Length: 392)
Name: NF14296_low_7
Description: NF14296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14296_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 4689716 - 4689341
Alignment:
| Q |
1 |
ttagaggttattgaagtttttgaatttattatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4689716 |
ttagaggttattgaagtttttgaatttattatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatact |
4689617 |
T |
|
| Q |
101 |
acaatttaggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4689616 |
acaatttaggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatca |
4689517 |
T |
|
| Q |
201 |
actagtatttggtattagagaaag-nnnnnnnnnnnnnncagttgagaaggatttcaagacaattttcacataatttactttacacacaaattttccatc |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4689516 |
actagtatttggtattagagaaagagaaagaaaaaaaaacagttgagaaggatttcaagacaattttcacataatttactttacacacaaattttccatc |
4689417 |
T |
|
| Q |
300 |
cctaattatagataccattgagagtttttgtcnnnnnnntatatatataccattgagaattagtttatgttttcat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4689416 |
cctaattatagataccattgagagtttttgtcaaaaaaatatatatataccattgagaattagtttatgttttcat |
4689341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 4775971 - 4776158
Alignment:
| Q |
30 |
tatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatttaggccttcccacatataattca |
129 |
Q |
| |
|
||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
4775971 |
tatggttaatttaagggattgtaaacttacaaagatgtgattcttgggggattattgtcatcatcagtgctacagtttaggccttcccacatataattca |
4776070 |
T |
|
| Q |
130 |
caggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtatttggtatta |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||| || ||||| |||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
4776071 |
caggggcacatggatctccttgccaatttctagtcactccataagcattcttgatgtttgtgatattatcaactagtattttgtatta |
4776158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 4682128 - 4681923
Alignment:
| Q |
11 |
ttgaagtttttgaatttat---tatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaattt |
107 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||| | ||| || ||| |
|
|
| T |
4682128 |
ttgaagtttttgaatttatgcatatgatttatttaagggattgtaaacttacaaagatgtgattcttgggatgttattgccatca---agactgcagttt |
4682032 |
T |
|
| Q |
108 |
aggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagta |
207 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
4682031 |
aggccttcccacatatagtttactggaccacatggatctccctgccaatttctagccaccccataggccttcttgatgtttctcatagtatcaactagta |
4681932 |
T |
|
| Q |
208 |
tttggtatt |
216 |
Q |
| |
|
||| ||||| |
|
|
| T |
4681931 |
tttcgtatt |
4681923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 46 - 216
Target Start/End: Complemental strand, 4716213 - 4716046
Alignment:
| Q |
46 |
gattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatttaggccttcccacatataattcacaggaccacatggatc |
145 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4716213 |
gattgtaaacttacagagatgtgattcttgggatgctatagccatca---atactacaatttaggccttcccacatataattcacaggaccacatggatc |
4716117 |
T |
|
| Q |
146 |
tccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtatttggtatt |
216 |
Q |
| |
|
||||||||||||||||| ||| ||||| | ||||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
4716116 |
tccttgccaatttctagtcaccccataagtattcttgatgtttgtgatagtatcaactagtattttgtatt |
4716046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 4737480 - 4737273
Alignment:
| Q |
10 |
attgaagtttttgaatttat---tatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||| ||||| ||||||| || |
|
|
| T |
4737480 |
attgaagtttttgaatttatgcatatggtttatttaaggaattataaacttacaaagatgtgattcttggaatgttattg---ccatcactactacagtt |
4737384 |
T |
|
| Q |
107 |
taggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagt |
206 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||| || ||||| |||||||| |||||||||||| || |
|
|
| T |
4737383 |
taggccttcccacatgtaattcacaggggcacatggatctccttgccaatttcttgccacaccataagcattcttgatgtttgtcatagtatcaactggt |
4737284 |
T |
|
| Q |
207 |
atttggtatta |
217 |
Q |
| |
|
|||| |||||| |
|
|
| T |
4737283 |
atttagtatta |
4737273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4746268 - 4746052
Alignment:
| Q |
1 |
ttagaggttattgaagttttt-gaatttat---tatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaa |
96 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |||| ||| |||||||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
4746268 |
ttagaggttattgaagttttttgaatttatgcatatggtt----gaaggaattataaacttacaaatatgtgattcttggggggttatttccaccatcaa |
4746173 |
T |
|
| Q |
97 |
tactacaatttaggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagt |
196 |
Q |
| |
|
|||| || ||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| ||||| |
|
|
| T |
4746172 |
tactgcagtttaggcattcctacatatactgcacaggaccacatggatctccttgccaatttctcgcaaccccataagcattcttgatgtttgtgatagt |
4746073 |
T |
|
| Q |
197 |
atcaactagtatttggtatta |
217 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
4746072 |
atcaactagtatttcgtatta |
4746052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 4912889 - 4913093
Alignment:
| Q |
10 |
attgaagtttttgaatttat-tatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaattta |
108 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||| || ||||||||||||||||||||||||||| | ||| | |||| ||||||||| |||| |
|
|
| T |
4912889 |
attgaagttcttgaatttatgtatggtttatttaaggaatggtaaacttacaaagatgtgattcttggaatgctatagccatc---aatactacagttta |
4912985 |
T |
|
| Q |
109 |
ggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||| |||||||| |||| || ||||| ||| |
|
|
| T |
4912986 |
ggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccaccacataagcatccttgatgtttgtgatagcattaactattat |
4913085 |
T |
|
| Q |
209 |
ttggtatt |
216 |
Q |
| |
|
|||||||| |
|
|
| T |
4913086 |
ttggtatt |
4913093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 4900483 - 4900689
Alignment:
| Q |
10 |
attgaagtttttgaatttat---tatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatt |
106 |
Q |
| |
|
||||||||||||||| |||| || ||||||| ||| |||||||||||||||||||||||||||||| | ||| | |||| ||||||||| || |
|
|
| T |
4900483 |
attgaagtttttgaagttatgcatacagtttatttaaggaattgtaaacttacaaagatgtgattcttggaatgctatagccatc---aatactacagtt |
4900579 |
T |
|
| Q |
107 |
taggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagt |
206 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || | ||| |||||||| |||||||||||||| |
|
|
| T |
4900580 |
taggacttcccacatatatttcacaggaccacatggatctccttgccaatttctagccaccccataagcatccttgatgtttgtgatagtatcaactagc |
4900679 |
T |
|
| Q |
207 |
atttggtatt |
216 |
Q |
| |
|
|||||||||| |
|
|
| T |
4900680 |
atttggtatt |
4900689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 4997126 - 4996924
Alignment:
| Q |
14 |
aagtttttgaatttat---tatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatttagg |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||||||| ||||| | ||| || |||||| |
|
|
| T |
4997126 |
aagtttttgaatttatgcatatggtttatttaaggaattataaacctacaaagatgtgattcttgggatgttattgccatca---agactgcagtttagg |
4997030 |
T |
|
| Q |
111 |
ccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtattt |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | ||||| |||||| | ||||||||||||||||||| |
|
|
| T |
4997029 |
ccttcccacatataattcacaggggcacatggatctccttgccaatttctagccaccccataagtgttcttgatgtttatgatagtatcaactagtattt |
4996930 |
T |
|
| Q |
211 |
ggtatt |
216 |
Q |
| |
|
||||| |
|
|
| T |
4996929 |
agtatt |
4996924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 10448034 - 10447862
Alignment:
| Q |
42 |
aagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatttaggccttcccacatataattcacaggaccacatg |
141 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
10448034 |
aagtgattctaaacttacaaagatgtgattctttgaatgttattg---ccatcaatactacagtttaggccttcccacatatacttcactggaccacatg |
10447938 |
T |
|
| Q |
142 |
gatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtatttggtatta |
217 |
Q |
| |
|
||||||| | |||||||||||||| ||||| || ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
10447937 |
gatctccattccaatttctagccatcccataagcattcttgatgtttgtgatagtatcaactagtatttggtatta |
10447862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 21438855 - 21439038
Alignment:
| Q |
30 |
tatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatc-atcaatactacaatttaggccttcccacatataattc |
128 |
Q |
| |
|
||||||||||| ||| || |||||||||||||||||||||||||||| | ||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21438855 |
tatggtttatttaaggaatagtaaacttacaaagatgtgattcttgggatgctat----atccatcaatgctacaatttaggccttcccacatataattc |
21438950 |
T |
|
| Q |
129 |
acaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtatttggtatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| || | ||| | |||||| |||| |||||||||||||||||||| |
|
|
| T |
21438951 |
ccaggaccacatggatctccttgccaatttctagccaccttataagcatccttgacgtttgtgatagcatcaactagtatttggtatt |
21439038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 4704216 - 4704011
Alignment:
| Q |
10 |
attgaagtttttgaatttat---tatggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatt |
106 |
Q |
| |
|
||||||||| |||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||| ||| |||| || |
|
|
| T |
4704216 |
attgaagttcttgaatttatggatatgatttatttaagggattgtaaacttacaaagatgtgattcttgggatgctattggcatca---atagtacagtt |
4704120 |
T |
|
| Q |
107 |
taggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagt |
206 |
Q |
| |
|
|| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| ||||| | ||||| || || | ||||||||||||||| |
|
|
| T |
4704119 |
tacgccttcccacatgtaattcacagggacacatggatctccttgccaatttctagacaccccataagtgttcttgatattcatgatagtatcaactagt |
4704020 |
T |
|
| Q |
207 |
atttggtat |
215 |
Q |
| |
|
|||| |||| |
|
|
| T |
4704019 |
atttcgtat |
4704011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 4923562 - 4923736
Alignment:
| Q |
31 |
atggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatc-atcaatactacaatttaggccttcccacatataattca |
129 |
Q |
| |
|
|||| ||||| ||| ||| ||| ||||||||||||||||||||||||||||||| ||| ||||| || || |||||||||||||| ||||| |||| |
|
|
| T |
4923562 |
atggcttattcaagggatagtagacttacaaagatgtgattcttggggggttat----atccatcaacgctgcagtttaggccttcccatatatacttca |
4923657 |
T |
|
| Q |
130 |
caggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtat |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| ||||| | |||||| |||||||| ||||||||||||||||| |
|
|
| T |
4923658 |
cagggccacatggatctccttgccaatttttagccaccccataagtcttcttgatgtttgtgatagtatcaactagtat |
4923736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 4726883 - 4726718
Alignment:
| Q |
51 |
taaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatttaggccttcccacatataattcacaggaccacatggatctcctt |
150 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||| || |||||||||| || |||| ||||||||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
4726883 |
taaacttacaaatatatgattcttttggggttatttccaccatcaatactgcagtttaagccttcccacatatatttcacgggaccacatggatctccct |
4726784 |
T |
|
| Q |
151 |
gccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtatttggtatt |
216 |
Q |
| |
|
||||||| |||| ||| ||||| || ||||| |||||||| |||||||||||| ||||| |||||| |
|
|
| T |
4726783 |
gccaattcctagtcaccccataagcattcttgatgtttgtcatagtatcaacttgtattcggtatt |
4726718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 4889466 - 4889633
Alignment:
| Q |
47 |
attgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatttaggccttcccacatataattcacaggaccacatggatct |
146 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| ||||| ||||| || |||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4889466 |
attgtatacttacaaagatatgattcttgggatgttattgccatca---atactgcagtttaggccttcccacacgtaattcacaggggcacatggatct |
4889562 |
T |
|
| Q |
147 |
ccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtatttggtatta |
217 |
Q |
| |
|
|||| ||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
4889563 |
ccttcccaatttctagtcagcccataagcattcttgatgtttgtgatagtatcaactagtatttcgtatta |
4889633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 4874691 - 4874877
Alignment:
| Q |
31 |
atggtttattgaagtgattgtaaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatttaggccttcccacatataattcac |
130 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| |||||||||| | | | || || |||||||| ||||||||||||||||| || | |
|
|
| T |
4874691 |
atggtttatttcagggattgtaaacttacaaagataggattcttgggccgccaatcagataatgcatactacagtttaggccttcccacatgtatgcttc |
4874790 |
T |
|
| Q |
131 |
aggaccacatggatctccttgccaatttctagccactccataggccttcttaatgtttgtaatagtatcaactagtatttggtatta |
217 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| ||||| || ||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
4874791 |
agggtaacatggatctccttgccaatttctttccaccccataagcattcttgatgtttgtgatagtatcaactagtatttggcatta |
4874877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University