View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_high_1 (Length: 948)
Name: NF14297_high_1
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 575
Target Start/End: Original strand, 8252812 - 8253370
Alignment:
| Q |
18 |
aggaagtgcccacattaattaaaggaatggctgaaacttcaaataaatgatttggatccttctcaaaattagcgctagaaccattgcctacannnnnnn- |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8252812 |
aggaagtgcccacattaattaaaggaatggctgaaacttcaaataaatgatttggttccttctcaaaattagcgctagaaccattgcctacatttttttt |
8252911 |
T |
|
| Q |
117 |
gttagcgctagaaccattgccttgagaaacatttcttttatcaaatgagttagacacaccacctacatgcccctcttcgtgataatcctctaaaatatgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8252912 |
gttagcgctagaaccattgccttgagaaacatttcttttatcaaatgagttagacacaccacctacatgcccctcttcgtgataatcctctgaaatatgt |
8253011 |
T |
|
| Q |
217 |
ttcaaaaattcatcaacctctcgtcgaccatcaaaagcctcatgtgatttaaccatatcagaatgtgcgtcctcgcctaaagtgaatccccactccttaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
8253012 |
ctcaaaaattcatcaacctctcgtcgaccatcaaaagcctcatgtgattcaaccatatcagaatgtgcgtcctcgcctaaagtgaatccccattcctcaa |
8253111 |
T |
|
| Q |
317 |
taattttgaaataaagaagcaccccatccaccacaaccttagcatagacattaatcacgtccaacgacgacgttgcaaccaaaacacgtgcataatccaa |
416 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8253112 |
taattttgaaataaagaagcaccccgtccaccacaaccttagcatagacattaatcacgtccaacgacgacgttgcaaccaaaacacgtgcataatccaa |
8253211 |
T |
|
| Q |
417 |
cccgtccttatcccgagtaaaattgtcgagtcgcatcaaacgaccacaatcagttacacaaagtttgaaaaattaaagttccatgcatgaagtggcacac |
516 |
Q |
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|| |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8253212 |
cctgtccttatccagagtaaaattgtcgactcacatcaaacgaccacaatcagttacacaaagtttgaaaaattaaagttccatgcatgaagtggcacac |
8253311 |
T |
|
| Q |
517 |
cataaattcggacccacgctcctctttcatgaaccactacttctctattccaccttaaa |
575 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8253312 |
cataaattcggacccacgctcctctttcacgaaccactacttctctattccaccttaaa |
8253370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 621 - 931
Target Start/End: Original strand, 8253371 - 8253681
Alignment:
| Q |
621 |
atactactaacctccctgttgtttgaggaacgcagcaaaaccttgtctgcacccatcgtaataatatcaagtgaatcaaatccagcataaaaaatacagc |
720 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8253371 |
atactactaacctccctattgtctgaggaacgcagcaaaaccttgtcagcacccatcagaataatatcaagtgaatcaaatccagcataaaaaatacagc |
8253470 |
T |
|
| Q |
721 |
gttgtaaaaccggtatcgcctctccattcaacactgtcaccactaaacccttagaatcccataacacatcatcaatttcagaccgatactttggaacata |
820 |
Q |
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|||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8253471 |
gttgtaaaaccggtatcgtctatccaatcaacactgtcaccactaaacccttagaatcccataacacatcatcaatttcagaccgatactttggaacata |
8253570 |
T |
|
| Q |
821 |
cagctgttttgagttaactgcgacatgatcatccttctttaacacattgtctataatcttttcctctctccccgatgcacctactacctttacctccgtt |
920 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
8253571 |
caactgttttgagttaactgcgacatgatcatccttctttaacacattgtctataatctcttcctctctccccgctgcacctactacctttacctccgtt |
8253670 |
T |
|
| Q |
921 |
gctgccatatt |
931 |
Q |
| |
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||||||||||| |
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|
| T |
8253671 |
gctgccatatt |
8253681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 286 - 418
Target Start/End: Complemental strand, 22557940 - 22557808
Alignment:
| Q |
286 |
tcctcgcctaaagtgaatccccactccttaataattttgaaataaagaagcaccccatccaccacaaccttagcatagacattaatcacgtccaacgacg |
385 |
Q |
| |
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||||| ||||||| ||||||||| || | ||||||||| ||||||| || |||||||||||||| || ||||||| ||| ||||| |||||||||| |
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| T |
22557940 |
tcctcccctaaagagaatccccattcttcaataattttaaaataaaaaatcaccccatccaccataatcttagcacctgtattgatcacctccaacgacg |
22557841 |
T |
|
| Q |
386 |
acgttgcaaccaaaacacgtgcataatccaacc |
418 |
Q |
| |
|
| || |||| |||||| | ||||||||| |||| |
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|
| T |
22557840 |
aagtagcaatcaaaacccttgcataatcaaacc |
22557808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 696 - 792
Target Start/End: Original strand, 12787871 - 12787967
Alignment:
| Q |
696 |
tcaaatccagcataaaaaatacagcgttgtaaaaccggtatcgcctctccattcaacactgtcaccactaaacccttagaatcccataacacatcat |
792 |
Q |
| |
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||||| || |||||||||||||| | ||||| ||| || || ||||||||||||| ||||||||||||||| ||||| || ||||||||| ||||| |
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| T |
12787871 |
tcaaaacccgcataaaaaatacaacattgtacaacaggaatagcctctccattcagcactgtcaccactaatccctttgatgcccataacaaatcat |
12787967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 553
Target Start/End: Original strand, 19158193 - 19158287
Alignment:
| Q |
460 |
ccacaatcagttacacaaagtttgaa-aaattaaagttccatgcatgaagtggcacaccataaattcggacccacgctcctctttcatgaaccac |
553 |
Q |
| |
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||||||||| |||||||||||| || |||||||| |||| ||||| ||||||||||||||||||| |||||| |||||||||| ||||||| |
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| T |
19158193 |
ccacaatcaaatacacaaagtttaaagaaattaaaattccgagcatgtagtggcacaccataaattcacacccacactcctctttctcgaaccac |
19158287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 744
Target Start/End: Original strand, 19158393 - 19158478
Alignment:
| Q |
659 |
aaccttgtctgcacccatcgtaataatatcaagtgaatcaaatccagcataaaaaatacagcgttgtaaaaccggtatcgcctctc |
744 |
Q |
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||||||||||||||||||| || || |||||||||| ||| ||||||| | |||||| |||||||| ||| |||| ||||||| |
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| T |
19158393 |
aaccttgtctgcacccatccgaacaagatcaagtgaagtaaaaccagcatcataaatacggcgttgtagaacaagtatagcctctc |
19158478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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