View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_high_11 (Length: 571)
Name: NF14297_high_11
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Complemental strand, 29241059 - 29240505
Alignment:
| Q |
1 |
ttattagaaccccacccatctcttcttcgtttgccgtctgcttcctcctctgaatttggctcgctagcttgccctaaattgctggataaagaggcactt- |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29241059 |
ttattagaaccccacccatctcttcttcgtttgtcgtctgcttcctcctctgaattaggctcgctagcttgccctaaattgctggataaagaggcactta |
29240960 |
T |
|
| Q |
100 |
----cggatttctgcattggttgtcacacaaactatgaaaaagcatgaacagggaaggccaaattgatcgcacaaacaagagtaagtaaaaacgaggaca |
195 |
Q |
| |
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|||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240959 |
aacccggatttctgcattggttgtaacacaaaatatgcaaaagtatgaacagggaaggccaaattgatcgcacaaacaagagtaagtaaaaacgaggaca |
29240860 |
T |
|
| Q |
196 |
agaacttacagatctaatgttccactttgcaaatcaagcaaaaaatcctttactagttgtcgagcactttcattcgcctaaaagatatgaagaaataaaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240859 |
agaacttacagatctaatgttccactttgcaaatcaagcaaaaaatcctttaccagctgtcgagcactttcattcgcctaaaagatatgaagaaataaaa |
29240760 |
T |
|
| Q |
296 |
attagaatccacctatctatctatctagtaagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagaa |
395 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240759 |
attagaatccacctatcta----tctagtaagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagaa |
29240664 |
T |
|
| Q |
396 |
ctctaaaattgaaatnnnnnnnngtaataattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagtaaaac |
495 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29240663 |
ctctaaaattgaaat-aaaaaaagtaataattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaaaagcaaaac |
29240565 |
T |
|
| Q |
496 |
gagaaacaaaattcaacatcagattgtgtggacttacaaaaatacggcaattcatagttt |
555 |
Q |
| |
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||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
29240564 |
gagaaacggaattcaacatcagattgtgtggacatccaaaaatacggcaattcatagttt |
29240505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 16828605 - 16828040
Alignment:
| Q |
1 |
ttattagaaccccacccatctcttcttcgtttgccgtctgcttcctcctctgaatttggctcgctagcttgccctaaattgctggataaagaggcactt- |
99 |
Q |
| |
|
|||||||||||||||||||||||||||| || | | || |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
16828605 |
ttattagaaccccacccatctcttcttctttggtcttccgcttcctcctctgaatttggctcgctagcttgccctgatttgctggataaagaggcactta |
16828506 |
T |
|
| Q |
100 |
----cggatttctgcattggttgtcacacaaactatgaaaaagcatgaacagggaaggccaaattga---tcgcacaaacaagagtaagtaaaaacgagg |
192 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| | ||| ||||||| ||||||||| ||||| ||||||||||| ||||||||||| |||| |
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| T |
16828505 |
aacccggatttctgcattggttgtaacacaaaatatgcataagtatgaacaaggaaggccagattgagagctgcacaaacaagcgtaagtaaaaaagagg |
16828406 |
T |
|
| Q |
193 |
acaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatcctttactagttgtcgagcactttcatt-cgcctaaaagatatgaagaaat |
291 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| | ||||||| |||||||||||| |
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| T |
16828405 |
acaagaacttacggatctaatgttccactttgcaaatcaagcaaaaaatcctttgccagctgtcgagcactttcattcctcctaaaatatatgaagaaat |
16828306 |
T |
|
| Q |
292 |
aaaaattagaatccacctatctatctatctagtaagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaat |
391 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||||| |||||||||| |||||||| |||||||| |||||||| |
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|
| T |
16828305 |
aaaaattagaatccac----ctatttatcgagtaagcaccccccataaaaataaaaatgatccattaagattaacaggacaacacgttatgtttttcaat |
16828210 |
T |
|
| Q |
392 |
agaactctaaaattg-----aaatnnnnnnnngtaataattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaa |
486 |
Q |
| |
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|||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16828209 |
agaactgtaaaattgatataaaaaaaataataataagaattacctttcaatgactgtaagcaaatttgttggatgatatttatctttcaacctatataaa |
16828110 |
T |
|
| Q |
487 |
aagtaaaacgagaaacaaaattcaacatcagattgtgtggacttacaaaaatacggcaattcatagtttt |
556 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16828109 |
aagtaaaacgagaaagggaaatcaacatcagattgtgtggacttacaaaaatatggcaattcatagtttt |
16828040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 846375 - 846427
Alignment:
| Q |
428 |
acctttcaatgactgtaagcaaatttgttggatgatatttatctttcaaccta |
480 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
846375 |
acctttcaattactgtaagtaaatttgttggatgatacttatctttcaaccta |
846427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 846142 - 846199
Alignment:
| Q |
189 |
gaggacaagaacttacagatctaatgttccactttgcaaatcaagcaaaaaatccttt |
246 |
Q |
| |
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|||||||| ||| |||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
846142 |
gaggacaaaaacatacatgtctagtgttccactttgcaaatcaagcaaaaactccttt |
846199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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