View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14297_high_14 (Length: 469)

Name: NF14297_high_14
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14297_high_14
NF14297_high_14
[»] chr2 (15 HSPs)
chr2 (20-201)||(12068316-12068498)
chr2 (114-187)||(25979237-25979309)
chr2 (114-172)||(25977871-25977929)
chr2 (114-187)||(1777470-1777543)
chr2 (114-174)||(2412426-2412486)
chr2 (114-172)||(8809597-8809656)
chr2 (102-173)||(30843633-30843704)
chr2 (114-200)||(23861753-23861838)
chr2 (114-174)||(20245303-20245364)
chr2 (217-290)||(23862933-23863006)
chr2 (116-168)||(12067000-12067052)
chr2 (217-259)||(3924779-3924821)
chr2 (115-201)||(23863021-23863107)
chr2 (116-174)||(43824166-43824224)
chr2 (223-259)||(24749514-24749550)
[»] chr3 (32 HSPs)
chr3 (217-314)||(52402982-52403079)
chr3 (114-201)||(39820575-39820662)
chr3 (114-201)||(9855179-9855265)
chr3 (115-174)||(20488368-20488427)
chr3 (232-283)||(37846450-37846501)
chr3 (114-283)||(40476222-40476390)
chr3 (114-201)||(42446527-42446614)
chr3 (114-201)||(45268541-45268628)
chr3 (114-201)||(52708588-52708675)
chr3 (217-283)||(32637077-32637143)
chr3 (114-172)||(40477374-40477432)
chr3 (114-172)||(54437467-54437525)
chr3 (217-270)||(42447690-42447743)
chr3 (114-174)||(20489356-20489416)
chr3 (113-173)||(48035731-48035791)
chr3 (114-174)||(53121303-53121363)
chr3 (113-172)||(45267305-45267364)
chr3 (114-172)||(46026077-46026135)
chr3 (402-448)||(52402853-52402899)
chr3 (114-167)||(20585649-20585702)
chr3 (114-187)||(41780793-41780866)
chr3 (114-174)||(976781-976841)
chr3 (114-174)||(47433807-47433867)
chr3 (114-201)||(42447758-42447845)
chr3 (114-173)||(52401018-52401077)
chr3 (217-283)||(4705786-4705852)
chr3 (217-279)||(32635697-32635759)
chr3 (114-172)||(46104344-46104402)
chr3 (217-283)||(51004245-51004311)
chr3 (231-296)||(20585401-20585466)
chr3 (217-250)||(52401120-52401153)
chr3 (217-261)||(53632720-53632764)
[»] chr6 (20 HSPs)
chr6 (217-314)||(17516265-17516362)
chr6 (114-201)||(21953207-21953294)
chr6 (114-174)||(16995452-16995512)
chr6 (114-183)||(20393257-20393326)
chr6 (114-174)||(3276368-3276428)
chr6 (114-174)||(20897495-20897555)
chr6 (114-201)||(34995115-34995202)
chr6 (107-167)||(1974157-1974217)
chr6 (114-174)||(18810533-18810593)
chr6 (116-172)||(20391217-20391273)
chr6 (114-174)||(34998139-34998199)
chr6 (116-167)||(1171656-1171707)
chr6 (114-180)||(1972401-1972467)
chr6 (402-448)||(17516445-17516491)
chr6 (115-167)||(17516164-17516216)
chr6 (114-201)||(17517280-17517367)
chr6 (115-161)||(20895960-20896006)
chr6 (116-145)||(3279526-3279555)
chr6 (115-160)||(25439650-25439695)
chr6 (217-281)||(21953309-21953373)
[»] chr7 (29 HSPs)
chr7 (217-314)||(39619652-39619749)
chr7 (114-314)||(41693646-41693846)
chr7 (388-448)||(39619517-39619577)
chr7 (116-201)||(5610159-5610245)
chr7 (113-174)||(31489933-31489994)
chr7 (114-190)||(31848126-31848202)
chr7 (113-201)||(31853548-31853635)
chr7 (114-201)||(41694926-41695013)
chr7 (114-182)||(13418951-13419019)
chr7 (114-201)||(32197879-32197967)
chr7 (114-174)||(35212069-35212129)
chr7 (217-253)||(39618758-39618794)
chr7 (217-273)||(42255061-42255117)
chr7 (114-201)||(5611478-5611565)
chr7 (114-201)||(17066426-17066512)
chr7 (116-201)||(12385679-12385763)
chr7 (114-174)||(24195608-24195668)
chr7 (217-273)||(36749147-36749203)
chr7 (217-273)||(37784083-37784139)
chr7 (231-298)||(31489811-31489878)
chr7 (114-167)||(32196685-32196738)
chr7 (116-165)||(32544781-32544830)
chr7 (217-290)||(43066106-43066179)
chr7 (114-174)||(12933420-12933480)
chr7 (114-174)||(24197101-24197161)
chr7 (217-309)||(32197772-32197864)
chr7 (114-166)||(36748199-36748250)
chr7 (217-273)||(36748300-36748356)
chr7 (114-174)||(40576767-40576827)
[»] chr1 (41 HSPs)
chr1 (114-314)||(24609920-24610119)
chr1 (217-314)||(24422618-24422715)
chr1 (114-179)||(35721102-35721167)
chr1 (114-201)||(35911859-35911946)
chr1 (114-201)||(46075021-46075108)
chr1 (217-273)||(24611017-24611073)
chr1 (114-201)||(11710554-11710641)
chr1 (114-201)||(20723659-20723746)
chr1 (114-201)||(37396811-37396898)
chr1 (114-187)||(27262909-27262982)
chr1 (114-187)||(27264201-27264274)
chr1 (114-201)||(20722473-20722558)
chr1 (217-309)||(24427233-24427325)
chr1 (217-309)||(30722219-30722311)
chr1 (114-190)||(35722267-35722343)
chr1 (118-201)||(17977530-17977613)
chr1 (114-173)||(37395634-37395693)
chr1 (114-173)||(46073886-46073945)
chr1 (217-283)||(23469859-23469925)
chr1 (114-159)||(11711266-11711311)
chr1 (116-172)||(9774040-9774096)
chr1 (114-174)||(9774886-9774946)
chr1 (114-190)||(24422516-24422592)
chr1 (113-201)||(27816691-27816779)
chr1 (217-281)||(35722177-35722241)
chr1 (217-309)||(37396704-37396796)
chr1 (114-201)||(24611088-24611175)
chr1 (114-173)||(26863861-26863920)
chr1 (114-201)||(26865155-26865242)
chr1 (114-201)||(47038867-47038954)
chr1 (217-283)||(13074466-13074532)
chr1 (114-160)||(45979508-45979554)
chr1 (217-259)||(48856313-48856355)
chr1 (217-266)||(34934654-34934703)
chr1 (217-266)||(35721201-35721250)
chr1 (217-314)||(35911747-35911844)
chr1 (114-167)||(48588966-48589019)
chr1 (118-174)||(17976766-17976822)
chr1 (217-273)||(20723588-20723644)
chr1 (114-174)||(24427367-24427427)
chr1 (114-174)||(34934745-34934805)
[»] chr8 (28 HSPs)
chr8 (218-280)||(14197927-14197989)
chr8 (114-201)||(28997964-28998051)
chr8 (114-201)||(28996835-28996922)
chr8 (114-201)||(36588223-36588310)
chr8 (114-201)||(38456701-38456788)
chr8 (113-187)||(4182622-4182696)
chr8 (114-200)||(22272242-22272328)
chr8 (115-172)||(38455449-38455506)
chr8 (113-201)||(14711532-14711620)
chr8 (114-174)||(22270944-22271004)
chr8 (114-174)||(22534720-22534780)
chr8 (217-296)||(22534599-22534678)
chr8 (217-275)||(38658583-38658641)
chr8 (114-174)||(10717122-10717182)
chr8 (114-174)||(14197826-14197886)
chr8 (145-201)||(18326543-18326599)
chr8 (114-174)||(30123153-30123213)
chr8 (118-201)||(1376940-1377023)
chr8 (118-201)||(1385526-1385609)
chr8 (114-201)||(22533318-22533405)
chr8 (114-201)||(38658482-38658568)
chr8 (114-172)||(10718448-10718506)
chr8 (217-251)||(28996937-28996971)
chr8 (115-201)||(45516399-45516484)
chr8 (217-270)||(10293728-10293781)
chr8 (115-167)||(3483635-3483687)
chr8 (114-174)||(14712775-14712835)
chr8 (217-273)||(18326614-18326670)
[»] chr5 (11 HSPs)
chr5 (109-172)||(31541622-31541685)
chr5 (115-174)||(3205100-3205159)
chr5 (114-201)||(3936579-3936666)
chr5 (114-201)||(6893981-6894068)
chr5 (114-160)||(31540497-31540543)
chr5 (114-174)||(3954053-3954113)
chr5 (115-171)||(14809165-14809221)
chr5 (217-288)||(15603944-15604015)
chr5 (114-201)||(27571100-27571187)
chr5 (114-201)||(34911800-34911886)
chr5 (217-283)||(6893900-6893966)
[»] scaffold0001 (2 HSPs)
scaffold0001 (103-201)||(120956-121054)
scaffold0001 (114-172)||(119594-119652)
[»] chr4 (23 HSPs)
chr4 (114-201)||(42359317-42359404)
chr4 (105-174)||(33137226-33137295)
chr4 (116-172)||(17371845-17371901)
chr4 (114-173)||(44705300-44705359)
chr4 (114-184)||(22204056-22204126)
chr4 (108-201)||(32699285-32699378)
chr4 (114-174)||(3880494-3880554)
chr4 (217-283)||(16573480-16573546)
chr4 (114-186)||(29059714-29059786)
chr4 (116-160)||(41935082-41935126)
chr4 (114-173)||(3879087-3879146)
chr4 (114-189)||(41933819-41933894)
chr4 (114-201)||(42358033-42358120)
chr4 (114-201)||(45618286-45618372)
chr4 (114-160)||(32698000-32698046)
chr4 (114-144)||(33134892-33134922)
chr4 (116-166)||(38167779-38167829)
chr4 (217-259)||(41934983-41935025)
chr4 (114-167)||(19675625-19675678)
chr4 (109-145)||(6353606-6353642)
chr4 (118-174)||(17326732-17326788)
chr4 (217-253)||(29415654-29415690)
chr4 (114-186)||(55542565-55542637)
[»] scaffold0002 (3 HSPs)
scaffold0002 (114-172)||(345897-345955)
scaffold0002 (217-283)||(345041-345107)
scaffold0002 (114-172)||(374336-374394)
[»] scaffold0516 (1 HSPs)
scaffold0516 (217-286)||(1022-1091)
[»] scaffold0517 (3 HSPs)
scaffold0517 (114-201)||(10316-10403)
scaffold0517 (114-173)||(11521-11580)
scaffold0517 (217-309)||(10418-10510)
[»] scaffold0106 (2 HSPs)
scaffold0106 (114-201)||(29730-29817)
scaffold0106 (114-174)||(30905-30965)
[»] scaffold0230 (1 HSPs)
scaffold0230 (114-174)||(429-489)
[»] scaffold0562 (1 HSPs)
scaffold0562 (114-173)||(9923-9982)
[»] scaffold0765 (1 HSPs)
scaffold0765 (116-201)||(1863-1948)
[»] scaffold0009 (1 HSPs)
scaffold0009 (114-166)||(202580-202632)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 12068498 - 12068316
Alignment:
Q  20 ctcattcccacccctatatagtatagatatctatatctatttcataataatttttatagtcctaactatctaatctgaaaacgaaagaaatata-gctaa 118  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  12068498 ctcattcccacccctatatagtatagatatctatatatatttcataataatttttatagtcctaactatctaatctgaaagcgaaaaaaatataggctaa 12068399  T
Q  119 aatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||| ||||||||||||||||||||  ||||||  ||||||||  ||||||||| ||||||||||||||||||| ||||||    
T  12068398 aatatgcttttgatccctgcaaatatagcgaatttaagtttttgtttctagtaaaaaaaatatttgaaaaacatccatgcaaa 12068316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 25979309 - 25979237
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaa 187  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||| |||||| |||||| ||| ||||||||    
T  25979309 gctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctggtaaaa-aaaaatttgaaa 25979237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 25977871 - 25977929
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||||||||| |||||||||||||| ||| |||||||||| |||||| ||||    
T  25977871 gctaaaatatgtttttggtccctgcaaatatagtgagtttgggttttggtccctggtaa 25977929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 1777470 - 1777543
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaa 187  Q
    ||||||||||||||||| ||||||||||||||  || |||| ||||| |||||| |||||| ||| ||||||||    
T  1777470 gctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccctggtaaaaaaaaaatttgaaa 1777543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 2412486 - 2412426
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||| |||||| ||||||    
T  2412486 gctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaa 2412426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 8809597 - 8809656
Alignment:
Q  114 gctaaaatatgtttttgatccct-gcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||| |||||| ||||    
T  8809597 gctaaaatatgtttttggtcccttgcaaatataacgaatttgggttttggtccctggtaa 8809656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 30843633 - 30843704
Alignment:
Q  102 gaaagaaatatagctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    ||||||||||  ||||||||||| |||| ||| |||||||||||| || |||||||||| |||||| |||||    
T  30843633 gaaagaaataaggctaaaatatgcttttaatcactgcaaatataacgagtttgggttttggtccctggtaaa 30843704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 23861753 - 23861838
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaa 200  Q
    ||||||||||||||||| |||||||||||||   || ||||| |||| |||||| |||||| ||| ||||||||  |||||||||||    
T  23861753 gctaaaatatgtttttggtccctgcaaatatggagagtttggattttggtccctggtaaaa-aaaaatttgaaatccatccctgcaa 23861838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 20245364 - 20245303
Alignment:
Q  114 gctaaaatatg-tttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| |||||||| ||||||||||||  ||||||||||||| |||||| ||||||    
T  20245364 gctaaaatatggtttttgattcctgcaaatatagcgaatttgggttttagtccctggtaaaa 20245303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 23863006 - 23862933
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaa 290  Q
    ||||||||| ||||||||||||| ||| |||||||||  |||| ||| ||||||||||  ||||||| ||||||    
T  23863006 aaaatagtctttggacccactttattgctgatttgtccaatttatgcctatgtggcatatgctgactgtgcaaa 23862933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 12067000 - 12067052
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtcccta 168  Q
    ||||||||||||||| ||||| ||||||||| ||||||| ||||| |||||||    
T  12067000 taaaatatgtttttggtccctacaaatataacgaatttgagttttggtcccta 12067052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 3924821 - 3924779
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacattt 259  Q
    |||||||||||||| |||||||| ||||||||||| |||||||    
T  3924821 aaaatagtccttggccccactttattgatgatttgacacattt 3924779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 23863107 - 23863021
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||||||||||| || ||||||||||   || ||||||||||  |||||||||||| ||| | ||||||  ||||| ||||||    
T  23863107 ctaaaatatgtttttggtctctgcaaatatggcgagtttgggttttgatccctagtaaaaaaaaaaattgaaatccatccttgcaaa 23863021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 43824166 - 43824224
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||  ||||||||||||||   |||||| ||||| |||||||||||||    
T  43824166 taaaatatgtttttcgtccctgcaaatatagcaaatttgagttttggtccctagtaaaa 43824224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 24749550 - 24749514
Alignment:
Q  223 gtccttggacccactttcttgatgatttgtcacattt 259  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  24749550 gtccttggacccactttcttgctgatttggcacattt 24749514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 52403079 - 52402982
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtgg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52403079 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtgg 52402982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 39820662 - 39820575
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  || |||||||||| |||||| |||||| ||| ||||||||||||||||||||||    
T  39820662 gctaaaatatggttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaaaaatttgaaaaacatccctgcaaa 39820575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 9855179 - 9855265
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| |||||||||||| |||||||  || ||||| |||| ||||||||||||| ||| ||||||||  ||||||||||||    
T  9855179 gctaaaatatgattttgatccctgtaaatatagcgagtttggattttggtccctagtaaaa-aaaaatttgaaattcatccctgcaaa 9855265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 20488368 - 20488427
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    |||||||||||||||| |||||||||||||  |||||||||||||| |||||| ||||||    
T  20488368 ctaaaatatgtttttggtccctgcaaatatggtgaatttgggttttggtccctggtaaaa 20488427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 37846501 - 37846450
Alignment:
Q  232 cccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  37846501 cccattttcttgatgatttgtcacttttttgcatatgtggcattagctgact 37846450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 283
Target Start/End: Original strand, 40476222 - 40476390
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaannnnnnnnnnnn 213  Q
    ||||||||||||||||| ||||||||||||||  || ||||| |||| ||| ||||||||| ||||| ||||||  |||||||| |||                
T  40476222 gctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtctctagtaaaaaaaataattgaaattcatccctgtaaatttttttgtttt 40476321  T
Q  214 nnnaaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
       |||||| ||||||  |||||||| ||||| ||||| ||||||| |||||| ||||||||||||||||    
T  40476322 tt-aaaataatccttgaccccactttattgataatttggcacatttttgcatacgtggcattagctgact 40476390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 42446527 - 42446614
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| |||||||||||||   || |||||||||| |||  ||||||||||||| |||||||  ||||||||||||    
T  42446527 gctaaaatatgcttttggtccctgcaaatatggcgagtttgggttttggtcgatagtaaaagaaatttttgaaattcatccctgcaaa 42446614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 45268628 - 45268541
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||||||||||| |||||||||||||||   | |||||||||| |||||| |||||| |||  |||||||  ||||||||||||    
T  45268628 gctaaaatatgtttttaatccctgcaaatatagcaagtttgggttttggtccctggtaaaaaaaaattttgaaatccatccctgcaaa 45268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 52708675 - 52708588
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  || |||||||||| ||| || |||||| |||| |||||||  ||||||||||||    
T  52708675 gctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtctctggtaaaataaatttttgaaattcatccctgcaaa 52708588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 32637143 - 32637077
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
    |||||||||| ||  |||||||| ||||||||||| | ||||| |||||||||||||||||||||||    
T  32637143 aaaatagtccctgaccccactttattgatgatttggcgcatttttgcatatgtggcattagctgact 32637077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 40477432 - 40477374
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||| ||||| ||||||||||||||| || |||||||||| |||||||||||    
T  40477432 gctaaaatatgattttggtccctgcaaatataacgagtttgggttttggtccctagtaa 40477374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 54437525 - 54437467
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||||||||| ||||||||||||||  ||||||| ||||| |||||||||||    
T  54437525 gctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttggtccctagtaa 54437467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 42447743 - 42447690
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtg 270  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||    
T  42447743 aaaatagtccttggacccactttcttgctgatttgtcccatttttgcctatgtg 42447690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 20489416 - 20489356
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||||||||||||| | || |||||||||| |||||| ||||||    
T  20489416 gctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaaaa 20489356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 48035791 - 48035731
Alignment:
Q  113 agctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    |||||||||||||||||||||||||||||||| | || ||||| |||| |||||| |||||    
T  48035791 agctaaaatatgtttttgatccctgcaaatatgacgagtttggattttggtccctggtaaa 48035731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 53121303 - 53121363
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||| |||||| ||||||    
T  53121303 gctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaa 53121363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 45267305 - 45267364
Alignment:
Q  113 agctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    |||||||||||||||||||||||||||||||||  || |||| ||||| |||||| ||||    
T  45267305 agctaaaatatgtttttgatccctgcaaatatagcgagtttgagttttggtccctggtaa 45267364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 46026077 - 46026135
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||||||||| ||||||||||||||  || ||||| |||| |||||||||||    
T  46026077 gctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctagtaa 46026135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 52402899 - 52402853
Alignment:
Q  402 aaggacagaatttggataatgtgttccacttattcttcctcacatcc 448  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||    
T  52402899 aaggacagaatttggaaaacgtgttccacttcttcttcctcacatcc 52402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 20585702 - 20585649
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccct 167  Q
    ||||||||||||||||||||||||||||||||  || ||||| |||| ||||||    
T  20585702 gctaaaatatgtttttgatccctgcaaatatagcgagtttggattttggtccct 20585649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 41780866 - 41780793
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaa 187  Q
    |||||||||||||||||||||||  |||||||   | |||||||||  ||||||||||||| ||||| ||||||    
T  41780866 gctaaaatatgtttttgatccctaaaaatatagcaagtttgggtttcggtccctagtaaaaaaaataattgaaa 41780793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 976781 - 976841
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||||||||||||||||||  ||||||  ||||| |||||| ||||||    
T  976781 gctaaaatatgcttttgatccctgcaaatatagcgaatttaagttttagtccctggtaaaa 976841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 47433867 - 47433807
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| ||||||||||||||  ||||||| ||||| |||||| ||||||    
T  47433867 gctaaaatatggttttggtccctgcaaatatagcgaatttgagttttggtccctggtaaaa 47433807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 42447845 - 42447758
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||||| ||||||||||   | | |||||||||| |||||| |||||| |||  |||||||  ||||||||||||    
T  42447845 gctaaaatatgcttttgattcctgcaaatacggttagtttgggttttggtccctggtaaaataaaattttgaaattcatccctgcaaa 42447758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 52401018 - 52401077
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    ||||||||||||||||| |||||||||||||   || |||||||||| |||||| |||||    
T  52401018 gctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctggtaaa 52401077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 4705786 - 4705852
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
    |||||||||||||| || |||||  |||||||||| ||||||| ||| || |||||||| |||||||    
T  4705786 aaaatagtccttggcccaactttactgatgatttggcacatttatgcctacgtggcattcgctgact 4705852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 32635697 - 32635759
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagct 279  Q
    |||||||||| | | |||||||| ||||||||||| | ||||| | |||||||||||||||||    
T  32635697 aaaatagtccatagccccactttattgatgatttggcgcatttttacatatgtggcattagct 32635759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 46104344 - 46104402
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||| ||||| ||||||||||||||  || |||| |||||||||||| ||||    
T  46104344 gctaaaatatgattttggtccctgcaaatatagcgagtttgagtttttgtccctggtaa 46104402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 51004245 - 51004311
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
    ||||||||||||   |||||||| ||||||||||| ||||||| ||| || |||||||| |||||||    
T  51004245 aaaatagtccttaaccccactttattgatgatttggcacatttatgcctacgtggcattcgctgact 51004311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 20585466 - 20585401
Alignment:
Q  231 acccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgta 296  Q
    ||||||||||||| ||||||| | ||||| ||| ||||||||||  ||||||| | ||||||||||    
T  20585466 acccactttcttgctgatttgactcatttttgcttatgtggcatgtgctgactgtacaaacttgta 20585401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 52401120 - 52401153
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgattt 250  Q
    |||||||||| |||||||||||||||||||||||    
T  52401120 aaaatagtccatggacccactttcttgatgattt 52401153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 53632764 - 53632720
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgt 261  Q
    |||||||||| | |||||||||||||| ||||||||| |||||||    
T  53632764 aaaatagtccctagacccactttcttgctgatttgtcccatttgt 53632720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 17516265 - 17516362
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtgg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  17516265 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattaactgactatgcaaacttgtacatgtgtcatccatgtgg 17516362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 21953207 - 21953294
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  |||||||| |||| |||||| |||||| ||| ||||||||||| ||||||||||    
T  21953207 gctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccctggtaaaaaaaaaatttgaaaaacgtccctgcaaa 21953294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 16995452 - 16995512
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||    
T  16995452 gctaaaatatgtttttggtccctgcaaatataaagaatttgggttttggtccctggtaaaa 16995512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 20393326 - 20393257
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatattt 183  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||  |||||| |||||| ||||||||    
T  20393326 gctaaaatatgcttttgatccctgcaaatatagcgaatttgggtttcagtccctggtaaaaaaaatattt 20393257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 3276368 - 3276428
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||||||||||||||  |||||||| |||| |||||||||||||    
T  3276368 gctaaaatatgtttttggtccctgcaaatatagcgaatttggattttagtccctagtaaaa 3276428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 20897555 - 20897495
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| ||||||    
T  20897555 gctaaaatatggttttggtccctgcaaatatagtgaatttgggttttggtccctggtaaaa 20897495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 34995115 - 34995202
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||||||||||||||||||  ||||||| ||||| || ||| |||||| ||| | ||||||  ||||||||||||    
T  34995115 gctaaaatatgcttttgatccctgcaaatatagcgaatttgagttttggttcctggtaaaaaaaaaaattgaaatccatccctgcaaa 34995202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 1974217 - 1974157
Alignment:
Q  107 aaatatagctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccct 167  Q
    |||||| ||||||||||||||||||||| ||||||||||  ||||||| ||||| ||||||    
T  1974217 aaatatggctaaaatatgtttttgatccttgcaaatatagcgaatttgagttttggtccct 1974157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 18810533 - 18810593
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| |||||||||||||| ||| |||||||||| |||||| ||||||    
T  18810533 gctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 18810593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 20391217 - 20391273
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||| |||||| ||||    
T  20391217 taaaatatgcttttggtccctgcaaatatagtgaatttgggttttggtccctcgtaa 20391273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 34998199 - 34998139
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||||||||||||||||||  || |||||||||| |||||| ||||||    
T  34998199 gctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaa 34998139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 1171707 - 1171656
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccct 167  Q
    ||||||||||||||||||||||||||||||| || ||||| |||| ||||||    
T  1171707 taaaatatgtttttgatccctgcaaatataacgagtttggtttttggtccct 1171656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 1972401 - 1972467
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaata 180  Q
    ||||||||||||||||| |||||||||||| |  ||||||||||||| ||| || |||||| |||||    
T  1972401 gctaaaatatgtttttggtccctgcaaataaagcgaatttgggttttagtctctggtaaaaaaaata 1972467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 17516445 - 17516491
Alignment:
Q  402 aaggacagaatttggataatgtgttccacttattcttcctcacatcc 448  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||    
T  17516445 aaggacagaatttggaaaacgtgttccacttcttcttcctcacatcc 17516491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 17516164 - 17516216
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccct 167  Q
    |||||||||||||||| |||||||||||||  ||| |||||||||| ||||||    
T  17516164 ctaaaatatgtttttggtccctgcaaatatggtgagtttgggttttggtccct 17516216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 17517367 - 17517280
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||| |||||||||||||   || |||| ||||| |||||| |||||| ||| | |||||   ||||||||||||    
T  17517367 gctaaaatatgtttttggtccctgcaaatatggcgagtttgagttttggtccctggtaaaaaaaaaaattgaatttcatccctgcaaa 17517280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 20895960 - 20896006
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggttttt 161  Q
    |||||||||||||||| ||||||||||||||  ||||||| ||||||    
T  20895960 ctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttt 20896006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 3279555 - 3279526
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatata 145  Q
    ||||||||||||||||||||||||||||||    
T  3279555 taaaatatgtttttgatccctgcaaatata 3279526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 25439650 - 25439695
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggtttt 160  Q
    |||||||||||||||  ||||||||||||||| || ||||||||||    
T  25439650 ctaaaatatgtttttagtccctgcaaatataacgattttgggtttt 25439695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 21953309 - 21953373
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctga 281  Q
    |||||||||| | | |||||||| | ||||||||||||||||| ||||||| || ||||| ||||    
T  21953309 aaaatagtccctagtcccactttttcgatgatttgtcacatttatgcatatttgacattaactga 21953373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 39619749 - 39619652
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtgg 314  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39619749 aaaatagtccttggactcactttcttaatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtgg 39619652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 114 - 314
Target Start/End: Original strand, 41693646 - 41693846
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaannnnnnnnnnnn 213  Q
    |||||||||||||||||||||||||||||||   ||||||||||||| |||||| |||||     | ||||||   ||||||||||||                
T  41693646 gctaaaatatgtttttgatccctgcaaatatggcgaatttgggttttggtccctggtaaatttcttttttgaattccatccctgcaaattttttttgttt 41693745  T
Q  214 nnnaaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtg 313  Q
       |||||||||| ||  || ||||| ||||||||||||||||||||||||||||||||||||||||||  | |||||||||||| ||| |||||| |||    
T  41693746 tttaaaatagtccctgaccctacttttttgatgatttgtcacatttgtgcatatgtggcattagctgacggtacaaacttgtacatgtgacatccacgtg 41693845  T
Q  314 g 314  Q
    |    
T  41693846 g 41693846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 39619577 - 39619517
Alignment:
Q  388 cattgtcttcaattaaggacagaatttggataatgtgttccacttattcttcctcacatcc 448  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  39619577 cattgtcttcaattaaggacagaatttggaaaacgtgttccacttattcttcctcacatcc 39619517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 5610159 - 5610245
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagt-aaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||| ||| || || |||| ||| ||||||||  ||||||||||||    
T  5610159 taaaatatgcttttgatccctgcaaatataacgaatttgggttttagtctctggtaaaaaaaaaaatttgaaatccatccctgcaaa 5610245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 31489994 - 31489933
Alignment:
Q  113 agctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    |||||||||||||||||| ||||||||||||||| || |||||||||| |||| ||||||||    
T  31489994 agctaaaatatgtttttggtccctgcaaatataacgagtttgggttttggtccttagtaaaa 31489933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 31848202 - 31848126
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaac 190  Q
    ||||||||||||||||  ||||||||||||||  ||||||||||||| |||||| |||||| |||  ||||||||||    
T  31848202 gctaaaatatgtttttagtccctgcaaatatagcgaatttgggttttggtccctggtaaaaaaaacttttgaaaaac 31848126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 31853548 - 31853635
Alignment:
Q  113 agctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||||||||||||| |||||||||||||  ||| ||||| |||| ||||||||||||| ||| | ||||||  ||||||||||||    
T  31853548 agctaaaatatgtttttggtccctgcaaatattgtgagtttggattttggtccctagtaaaa-aaaaaattgaaatccatccctgcaaa 31853635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 41695013 - 41694926
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||||||||||| |||||||||||||||  || |||| ||||| |||||| |||||| | || |||||||  ||||||||||||    
T  41695013 gctaaaatatgtttttcatccctgcaaatatagcgagtttgagttttggtccctggtaaaaaatatttttgaaatccatccctgcaaa 41694926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 13418951 - 13419019
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatt 182  Q
    ||||||||||||||||| |||||||||||||   |||||||||| || |||||| |||||| |||||||    
T  13418951 gctaaaatatgtttttggtccctgcaaatattgcgaatttgggtattggtccctggtaaaaaaaatatt 13419019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 32197967 - 32197879
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaata-tttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  ||||||||||||| |||| | |||||| ||| | |||||||| | ||||||||||    
T  32197967 gctaaaatatgcttttggtccctgcaaatatagcgaatttgggttttggtccttggtaaaaaaaaaattttgaaaagcgtccctgcaaa 32197879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 35212069 - 35212129
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||||||||||||| | || |||||||||| |||||| ||||||    
T  35212069 gctaaaatatgtttttggtccctgcaaatatgacgagtttgggttttggtccctggtaaaa 35212129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 39618758 - 39618794
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtc 253  Q
    |||||||||||||||||||||||||||||||||||||    
T  39618758 aaaatagtccttggacccactttcttgatgatttgtc 39618794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 42255061 - 42255117
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 273  Q
    ||||||||| ||||| ||||||||||| ||||||||| ||||| |||||||||||||    
T  42255061 aaaatagtcattggatccactttcttgctgatttgtcccatttctgcatatgtggca 42255117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 5611565 - 5611478
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  || |||||||||| |||||| |||||| ||| | ||||||  | ||||||||||    
T  5611565 gctaaaatatgattttggtccctgcaaatatagcgagtttgggttttcgtccctcgtaaaaaaaaaaattgaaattcgtccctgcaaa 5611478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 17066426 - 17066512
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| |||| |||||||||||||||  || |||||||||| |||||| |||||| ||| | ||||||  ||||||||||||    
T  17066426 gctaaaatatgcttttaatccctgcaaatatagcgagtttgggttttggtccctggtaaaa-aaaaaattgaaattcatccctgcaaa 17066512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 12385763 - 12385679
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||| ||||| ||||||||||||||  || ||||| |||| |||||| |||||| ||| ||||||||  ||||||||||||    
T  12385763 taaaatatgattttggtccctgcaaatatagcgagtttggattttggtccctggtaaaa-aaaaatttgaaattcatccctgcaaa 12385679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 24195608 - 24195668
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||||||||||||||  || ||||||||||  ||||| ||||||    
T  24195608 gctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttgctccctggtaaaa 24195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 36749203 - 36749147
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 273  Q
    ||||||||| ||||| ||||||||| | ||||||||| ||||| |||||||||||||    
T  36749203 aaaatagtctttggatccactttctcgctgatttgtctcatttctgcatatgtggca 36749147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 37784083 - 37784139
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 273  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||  ||| |||||||||    
T  37784083 aaaatagtccttggaccaactttcttgctgatttgtctcattcctgcctatgtggca 37784139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 31489878 - 31489811
Alignment:
Q  231 acccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtaca 298  Q
    ||||||||||||| ||||||||| ||||| ||| ||||||||||  ||| ||| ||||||| ||||||    
T  31489878 acccactttcttgctgatttgtctcatttttgcctatgtggcatatgctaactctgcaaacctgtaca 31489811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 32196685 - 32196738
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccct 167  Q
    ||||||||||||||||| ||||||||||||||  | |||||| |||| ||||||    
T  32196685 gctaaaatatgtttttggtccctgcaaatatagcgtatttggattttggtccct 32196738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 32544830 - 32544781
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtcc 165  Q
    ||||||||| ||||| ||||||||||||||  ||||||||||||| ||||    
T  32544830 taaaatatgattttggtccctgcaaatatagcgaatttgggttttggtcc 32544781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 43066106 - 43066179
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaa 290  Q
    |||||||||||||| || ||||  ||||||||||||  ||||| ||| |||||||||||  |||||| ||||||    
T  43066106 aaaatagtccttggccctacttaattgatgatttgttgcatttttgcctatgtggcattctctgactgtgcaaa 43066179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 12933420 - 12933480
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| |||||||||||||| ||| ||||  |||| |||||| ||||||    
T  12933420 gctaaaatatgcttttggtccctgcaaatatagtgagtttgaattttggtccctggtaaaa 12933480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 24197161 - 24197101
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| ||||||||||||||  ||||||| ||||| || ||| ||||||    
T  24197161 gctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggttcctggtaaaa 24197101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 32197864 - 32197772
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatcca 309  Q
    |||||||||| ||| |||| ||| | ||||||||||||||||| ||||||  |||||   ||||||  ||||||| |||||| ||| ||||||    
T  32197864 aaaatagtccctggtcccattttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatcca 32197772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 36748199 - 36748250
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccc 166  Q
    ||||||||||||||||| ||||||||||||| | || |||||||||| |||||    
T  36748199 gctaaaatatgtttttggtccctgcaaatatga-gagtttgggttttggtccc 36748250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 36748300 - 36748356
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 273  Q
    |||||||||  |||||||||||| ||| ||||||||| ||||| ||| |||||||||    
T  36748300 aaaatagtctctggacccacttttttgctgatttgtctcatttttgcctatgtggca 36748356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 40576767 - 40576827
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| ||||||||||||| | |||||||| |||| ||| || ||||||    
T  40576767 gctaaaatatgcttttggtccctgcaaatatgacgaatttggattttggtctctggtaaaa 40576827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 314
Target Start/End: Original strand, 24609920 - 24610119
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaannnnnnnnnnnn 213  Q
    ||||||||||||||||| |||||||||||||   || |||||||||| ||||||||||||  || | ||||||   ||||||||||||                
T  24609920 gctaaaatatgtttttggtccctgcaaatatggcgagtttgggttttggtccctagtaaataaattttttgaatttcatccctgcaaaattttttgtttt 24610019  T
Q  214 nnnaaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtg 313  Q
       |||||||||| | | |||||||| ||| |||||||||||||||||||||||||||||| |||||| | | |||||||||||| ||| ||||||||||    
T  24610020 tt-aaaatagtccctcgccccacttttttggtgatttgtcacatttgtgcatatgtggcatgagctgattgtacaaacttgtacatgtggcatccatgtg 24610118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 24422618 - 24422715
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtgg 314  Q
    |||||||||||| |||||||||||||| | ||||||| ||||| ||| ||||||||||  ||||||||||||||| |||||| ||| |||||| ||||    
T  24422618 aaaatagtccttagacccactttcttgctaatttgtctcatttctgcctatgtggcatatgctgactatgcaaacatgtacatgtggcatccaggtgg 24422715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 35721102 - 35721167
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaat 179  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||| ||||    
T  35721102 gctaaaatatgtttttggtccctgcaaatataacgaatttgggttttggtccctggtaaaaaaaat 35721167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 35911946 - 35911859
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  |||||||| |||| |||| | |||||| ||| ||||||||||| ||||||||||    
T  35911946 gctaaaatatgcttttggtccctgcaaatatagcgaatttggattttggtccttggtaaaaaaaaaatttgaaaaacgtccctgcaaa 35911859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 46075108 - 46075021
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||||||||||||||||||  || |||||||||| |||||| |||||| ||| | ||||||   |||||||||||    
T  46075108 gctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaaaaaattgaaattaatccctgcaaa 46075021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 24611073 - 24611017
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 273  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||  |||||||||    
T  24611073 aaaatagtccttggacccactttcttgatgatttgtctcatttttgtctatgtggca 24611017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 11710554 - 11710641
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||||||||||||||||||| |||||||| ||  ||||||||| |||||| |||||| |||  ||||||| ||  |||||||||    
T  11710554 gctaaaatatgtttttgatccctgtaaatataacgaggttgggttttggtccctggtaaaaaaaacttttgaaatacgcccctgcaaa 11710641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 20723746 - 20723659
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||| ||||||||||||||  ||||||| ||||| |||||| ||||||  ||  |||||||  ||||||||||||    
T  20723746 gctaaaatatgtttttggtccctgcaaatatagcgaatttgagttttagtccctggtaaaaataaattttgaaatccatccctgcaaa 20723659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 37396898 - 37396811
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  ||||||| ||||| |||| | |||||| || | |||||||||| ||||||||||    
T  37396898 gctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccttggtaaaaaaattttttgaaaaacgtccctgcaaa 37396811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 27262909 - 27262982
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaa 187  Q
    ||||||||||||||||| ||||||||||||||  || |||| ||||| |||||| |||||| ||| ||||||||    
T  27262909 gctaaaatatgtttttggtccctgcaaatatagcgagtttgtgttttggtccctggtaaaaaaaaaatttgaaa 27262982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 27264274 - 27264201
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaa 187  Q
    ||||||||||| ||||| ||||||||||||||  || |||||||||| |||||| |||||| ||| ||||||||    
T  27264274 gctaaaatatgattttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaaaaaaatttgaaa 27264201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 20722473 - 20722558
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||| || ||||| ||||||||||||||  ||||||||||||| |||||| |||||| ||| |||   ||||||||||||||||    
T  20722473 gctaaaatgtgcttttggtccctgcaaatatagcgaatttgggttttggtccctggtaaaaaaaaaatt--gaaaacatccctgcaaa 20722558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 24427325 - 24427233
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatcca 309  Q
    |||||||||| || ||||||||||||| ||||||||| ||||| ||| ||| ||  ||  ||||||||||||||| |||||| ||| ||||||    
T  24427325 aaaatagtccctgaacccactttcttggtgatttgtctcatttttgcctatttgaaatatgctgactatgcaaacctgtacatgtggcatcca 24427233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 309
Target Start/End: Original strand, 30722219 - 30722311
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatcca 309  Q
    |||||||||| |||||||||||||||| ||||||||| ||||| ||| || ||||||   ||||||| || ||| |||  |||||||||||||    
T  30722219 aaaatagtccctggacccactttcttgctgatttgtctcatttttgcctacgtggcaaatgctgactgtgtaaagttggccacgtgtcatcca 30722311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 35722343 - 35722267
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaac 190  Q
    ||||||||||||||||| |||||| |||||||  |||||||| |||| ||| || |||||| ||| |||||||||||    
T  35722343 gctaaaatatgtttttggtccctgtaaatatagcgaatttggattttggtctctggtaaaaaaaaaatttgaaaaac 35722267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 17977613 - 17977530
Alignment:
Q  118 aaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||| ||||| ||||||||||||||  ||||||||||||| |||| | |||||| ||| ||||||||   |||||||||||    
T  17977613 aaatatggttttggtccctgcaaatatagcgaatttgggttttggtccttggtaaaaaaaaaatttgaaatcaatccctgcaaa 17977530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 37395634 - 37395693
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    ||||||||||||||||| ||||||||||||||  | ||||||||||| |||||| |||||    
T  37395634 gctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggtaaa 37395693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 46073886 - 46073945
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    ||||||||||| ||||||||||||||||||||   |||||||||||| |||||| |||||    
T  46073886 gctaaaatatgcttttgatccctgcaaatatagcaaatttgggttttagtccctggtaaa 46073945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 23469925 - 23469859
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
    |||||||||| | | |||||||  ||||||||||| | ||||| |||||||||||||||||||||||    
T  23469925 aaaatagtccctagccccacttcattgatgatttggcgcatttttgcatatgtggcattagctgact 23469859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 11711311 - 11711266
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggttt 159  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||    
T  11711311 gctaaaatatgtttttggtccctgcaaatatagcgaatttgggttt 11711266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 9774040 - 9774096
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||||||| ||||||||||||||| || |||| ||||| |||||| ||||    
T  9774040 taaaatatgtttttggtccctgcaaatataacgagtttgagttttggtccctggtaa 9774096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 9774946 - 9774886
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| ||||||||||||||  || |||||||||| |||||| ||||||    
T  9774946 gctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 9774886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 24422516 - 24422592
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaac 190  Q
    ||||||||||| ||||| |||||| ||||||| |||| |||| ||||  ||||| |||||| ||| |||||||||||    
T  24422516 gctaaaatatgcttttggtccctgtaaatatagtgaagttggattttgatccctggtaaaaaaaaaatttgaaaaac 24422592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 27816779 - 27816691
Alignment:
Q  113 agctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||| ||||||| ||||| ||||||||||||||   |||||||||||| |||||| |||||| |||  |||||||   |||||||||||    
T  27816779 agcttaaatatggttttggtccctgcaaatatagccaatttgggttttggtccctggtaaaaaaaaattttgaaatcaatccctgcaaa 27816691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 35722241 - 35722177
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctga 281  Q
    |||||||||| | | |||||||| | ||||||||||||||||| ||||||| |||||||| ||||    
T  35722241 aaaatagtccctagtcccactttttcgatgatttgtcacatttatgcatatctggcattaactga 35722177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 37396796 - 37396704
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatcca 309  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||  |||||   ||||||  ||||||| |||||| ||| ||||||    
T  37396796 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatcca 37396704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 24611175 - 24611088
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||| |||||| |||||| | || |||| ||||| |||||| |||||| |||  ||||||   ||||||||||||    
T  24611175 gctaaaatatgtttttggtccctgtaaatatgacgagtttgagttttggtccctggtaaaataaaattttgaatttcatccctgcaaa 24611088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 26863861 - 26863920
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    |||||||| |||||||| ||||||||||||||  ||||||| ||||| |||||| |||||    
T  26863861 gctaaaatgtgtttttggtccctgcaaatatagcgaatttgagttttggtccctggtaaa 26863920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 26865242 - 26865155
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||||| |||||| || |||||||||||  |||||||| |||| |||||| ||||||  ||  |||||||  ||||||||||||    
T  26865242 gctaaaatatatttttggtctctgcaaatatagcgaatttggattttagtccctggtaaaaataaattttgaaatccatccctgcaaa 26865155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 47038867 - 47038954
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||  ||||||||||||||   | |||||||||| |||||| |||||| |||  ||||||   ||||||||||||    
T  47038867 gctaaaatatgtttttagtccctgcaaatatagctagtttgggttttggtccctggtaaaaaaaaattttgaattccatccctgcaaa 47038954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 13074532 - 13074466
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||| ||| || || ||||| |||||||    
T  13074532 aaaatagtctttggccccactttattgatgatttggcacatttatgcctacgtagcattcgctgact 13074466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 45979554 - 45979508
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttt 160  Q
    ||||||||||||||||| ||||||||||||||  ||||||| |||||    
T  45979554 gctaaaatatgtttttggtccctgcaaatatagcgaatttgagtttt 45979508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 48856313 - 48856355
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacattt 259  Q
    |||||||||||||| |||||||| ||||||||||| |||||||    
T  48856313 aaaatagtccttggccccactttattgatgatttggcacattt 48856355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 34934703 - 34934654
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcata 266  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||    
T  34934703 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcata 34934654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 35721201 - 35721250
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcata 266  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||    
T  35721201 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcata 35721250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 35911844 - 35911747
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatccatgtgg 314  Q
    ||||| |||| ||| |||||||| | ||||||||||||||||| ||||||  |||||   ||||||  ||||||| |||||| ||| |||||| ||||    
T  35911844 aaaatggtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatccaggtgg 35911747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 48589019 - 48588966
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccct 167  Q
    ||||||||||||||||| |||||| ||||||  ||| |||||||||| ||||||    
T  48589019 gctaaaatatgtttttggtccctgtaaatatggtgagtttgggttttggtccct 48588966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 17976766 - 17976822
Alignment:
Q  118 aaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||| ||||| | ||||||||||||  ||||||||||||| |||||| ||||||    
T  17976766 aaatatggttttggttcctgcaaatatagcgaatttgggttttggtccctggtaaaa 17976822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 20723644 - 20723588
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 273  Q
    |||||||||||||  ||||||||  |||||||||| | ||||| |||||||||||||    
T  20723644 aaaatagtccttgaccccactttactgatgatttggcccatttttgcatatgtggca 20723588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 24427427 - 24427367
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||||| ||||||||  || |||| ||||| |||||| ||||||    
T  24427427 gctaaaatatgtttttggtccctacaaatatagcgagtttgagttttagtccctggtaaaa 24427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 34934805 - 34934745
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||  ||||||||||||||  ||||||||||||| |||| | ||||||    
T  34934805 gctaaaatatgctttttgtccctgcaaatatagcgaatttgggttttggtccttggtaaaa 34934745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 14197927 - 14197989
Alignment:
Q  218 aaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctg 280  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  14197927 aaatagtccatggatccactttcttgatgatttgtcacatttgtgaatatgtggcattagctg 14197989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 28998051 - 28997964
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||| ||||||||||||| |||  |||||||  ||||||||||||    
T  28998051 gctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctagtaaaaaaaagttttgaaattcatccctgcaaa 28997964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 28996835 - 28996922
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| |||||||||||||| ||| |||||||||| |||||| |||||| |||  |||||||  ||||||||||||    
T  28996835 gctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaaaaaagttttgaaattcatccctgcaaa 28996922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 36588223 - 36588310
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  || |||| ||||| |||||| |||||| ||| |||||||  |||||||||||||    
T  36588223 gctaaaatatgcttttggtccctgcaaatatagcgagtttgcgttttggtccctggtaaaaaaaaaatttgaattacatccctgcaaa 36588310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 38456788 - 38456701
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||   ||||| |||||| |||||| |||||| ||| ||||||||  ||||||||||||    
T  38456788 gctaaaatatgcttttggtccctgcaaatatagcaaatttaggttttggtccctggtaaaaaaaaaatttgaaattcatccctgcaaa 38456701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 4182622 - 4182696
Alignment:
Q  113 agctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaa 187  Q
    |||||||||||| ||||| |||||| |||||||  ||||||||||||| |||||| |||||| ||| ||||||||    
T  4182622 agctaaaatatgcttttggtccctgtaaatatagcgaatttgggttttggtccctggtaaaaaaaaaatttgaaa 4182696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 22272328 - 22272242
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaa 200  Q
    ||||||||||| ||||| |||| |||||||||  ||||||||||||| |||||| |||||| ||| ||||||||   ||||||||||    
T  22272328 gctaaaatatgcttttggtccccgcaaatatagcgaatttgggttttggtccctggtaaaaaaaaaatttgaaatcaatccctgcaa 22272242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 38455449 - 38455506
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    |||||||||||||||| ||| |||||||||| |||||||| ||||| |||||||||||    
T  38455449 ctaaaatatgtttttggtccttgcaaatatagtgaatttgagttttggtccctagtaa 38455506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 14711532 - 14711620
Alignment:
Q  113 agctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||| ||||||| |||| |||| |||||||||||| | ||||| |||| |||||| |||||| ||| ||||||||  ||||||||||||    
T  14711532 agcttaaatatgcttttaatccttgcaaatataataagtttggattttcgtccctggtaaaaaaaaaatttgaaattcatccctgcaaa 14711620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 22270944 - 22271004
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||||||||||||||||||  |||||||| |||| |||||| ||||||    
T  22270944 gctaaaatatgcttttgatccctgcaaatatagcgaatttggattttagtccctggtaaaa 22271004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 22534780 - 22534720
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||||||||||||||||||  || |||||||||| |||||| ||||||    
T  22534780 gctaaaatatgcttttgatccctgcaaatatagcgagtttgggttttggtccctggtaaaa 22534720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 22534678 - 22534599
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgta 296  Q
    |||| |||||||||||||||||||||| ||||||| | ||||| ||| |||||||||   ||||||| | ||||||||||    
T  22534678 aaaaaagtccttggacccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactgtacaaacttgta 22534599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 38658583 - 38658641
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcatt 275  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||| ||| |||||||||||    
T  38658583 aaaatagtctttggccccactttattgatgatttggcacatttatgcctatgtggcatt 38658641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 10717122 - 10717182
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| ||||||||||||||  || |||||||||| |||||| ||||||    
T  10717122 gctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa 10717182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 14197826 - 14197886
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| |||||||||||||   || ||||| |||| |||||||||||||    
T  14197826 gctaaaatatgtttttggtccctgcaaatatggcgagtttggattttggtccctagtaaaa 14197886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 18326543 - 18326599
Alignment:
Q  145 aatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||||||||||| |||||| |||||| |||| |||||||||| ||| ||||||    
T  18326543 aatgaatttgggttttggtccctggtaaaacaaatttttgaaaaacgtccttgcaaa 18326599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 30123153 - 30123213
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||| | ||||||||  |||||||||||||| ||||| ||||||    
T  30123153 gctaaaatatgtttttggtccatacaaatatagcgaatttgggtttttctccctcgtaaaa 30123213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 1376940 - 1377023
Alignment:
Q  118 aaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||| ||||| ||||||||||||||   ||||||| |||| |||||| |||||| ||| ||||||||   |||||||||||    
T  1376940 aaatatgattttggtccctgcaaatatagccaatttggattttggtccctggtaaaaaaaaaatttgaaatcaatccctgcaaa 1377023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 1385609 - 1385526
Alignment:
Q  118 aaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||| ||||| ||||||||||||||   ||||||| |||| |||||| |||||| ||| ||||||||   |||||||||||    
T  1385609 aaatatggttttggtccctgcaaatatagccaatttggattttggtccctggtaaaaaaaaaatttgaaatcaatccctgcaaa 1385526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 22533318 - 22533405
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| |||||| | |||||  || |||||||||| |||||| |||||| |||| ||||||   ||||||||||||    
T  22533318 gctaaaatatgcttttggtccctgtatatatagcgagtttgggttttggtccctggtaaaaaaaatttttgaatttcatccctgcaaa 22533405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 38658482 - 38658568
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| || || ||| ||||||||||  ||||||||||||| |||||| |||||| ||| | ||||||  ||||||||||||    
T  38658482 gctaaaatatgcttctggtccatgcaaatatagcgaatttgggttttggtccctggtaaaa-aaaaaattgaaatccatccctgcaaa 38658568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 10718506 - 10718448
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||| ||||| ||||||||||||||  || |||||||||| |||||| ||||    
T  10718506 gctaaaatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaa 10718448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 28996937 - 28996971
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttg 251  Q
    ||||||||||||||||||||||| |||||||||||    
T  28996937 aaaatagtccttggacccactttattgatgatttg 28996971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 45516399 - 45516484
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||||||||||  ||| || |||||||  ||||||||||||| ||| || |||||| ||| | ||||||||||||| ||||||    
T  45516399 ctaaaatatgtttttagtccatgtaaatatagcgaatttgggttttggtctctggtaaaa-aaaaaattgaaaaacatccttgcaaa 45516484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 10293781 - 10293728
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtg 270  Q
    ||||||||||||  ||||| ||||||| ||||||||| ||||| ||||||||||    
T  10293781 aaaatagtccttaaacccattttcttgctgatttgtctcatttatgcatatgtg 10293728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 3483635 - 3483687
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccct 167  Q
    |||||||||||||||| ||||||||||||||  || |||| ||||| ||||||    
T  3483635 ctaaaatatgtttttggtccctgcaaatatagcgagtttgagttttggtccct 3483687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 14712835 - 14712775
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    |||||||||||  ||| ||| ||| ||||||||||| |||||||||| ||||| |||||||    
T  14712835 gctaaaatatgcctttaatctctgtaaatataatgagtttgggttttggtccccagtaaaa 14712775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 18326614 - 18326670
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggca 273  Q
    |||||||||| ||  |||||||||||| ||||||||| ||||| ||| |||||||||    
T  18326614 aaaatagtccctgagcccactttcttgttgatttgtcccatttctgcctatgtggca 18326670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 31541685 - 31541622
Alignment:
Q  109 atatagctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    |||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  31541685 atatggctaaaatatgtttttgatccctgcaaatataacgaattttggtttttgtccctggtaa 31541622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 3205159 - 3205100
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||| |||||| ||||||    
T  3205159 ctaaaatatgcttttgatccctgcaaatatgatgagtttgggttttggtccctggtaaaa 3205100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 3936579 - 3936666
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||| |||||| ||||||  || | |||||  |||||||||||||    
T  3936579 gctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaaagaaaaattgaattacatccctgcaaa 3936666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 6894068 - 6893981
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||| ||| ||||||||| | || ||| |||||| |||||| |||||| ||| ||||||||  ||||||||||||    
T  6894068 gctaaaatatgtttttggtccttgcaaatatgacgagtttaggttttggtccctggtaaaaaaaaaatttgaaattcatccctgcaaa 6893981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 31540497 - 31540543
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttt 160  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||    
T  31540497 gctaaaatatgtttttggtccctgcaaatataacgaatttgggtttt 31540543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 3954053 - 3954113
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| ||| ||||||||||  ||||||||||||| |||||| ||||||    
T  3954053 gctaaaatatgtttttggtccttgcaaatatatcgaatttgggttttggtccctggtaaaa 3954113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 14809165 - 14809221
Alignment:
Q  115 ctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagta 171  Q
    |||||||||||||||||||||| ||||||||  |||||||| |||| ||||||||||    
T  14809165 ctaaaatatgtttttgatccctacaaatatagcgaatttggattttggtccctagta 14809221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 15604015 - 15603944
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgca 288  Q
    |||||||||||||||||||||||  |||||||||| || |||| ||| ||||| ||||| ||||||| ||||    
T  15604015 aaaatagtccttggacccactttactgatgatttggcatatttttgcctatgtagcattcgctgactgtgca 15603944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 27571187 - 27571100
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  || ||||||||||  ||||| |||||| ||| | ||||||  ||||||||||||    
T  27571187 gctaaaatatgattttggtccctgcaaatatagcgagtttgggttttgatccctggtaaaaaaaaaaattgaaatccatccctgcaaa 27571100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 34911886 - 34911800
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  || ||||| ||||  |||||||||||| ||| | ||||||  ||||||||||||    
T  34911886 gctaaaatatgattttggtccctgcaaatatagcgagtttggattttgatccctagtaaaa-aaaaaattgaaattcatccctgcaaa 34911800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 6893966 - 6893900
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
    ||||||||| |||  |||||||| ||||||||||| ||||||| ||| ||||| ||||| |||||||    
T  6893966 aaaatagtcattgaccccactttattgatgatttggcacatttatgcctatgtagcattcgctgact 6893900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 121054 - 120956
Alignment:
Q  103 aaagaaatatagctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    |||||||||  ||||||||||| ||||| ||||||||||||||| || |||||||||| |||||| |||||| ||| |||||||   ||||||||||||    
T  121054 aaagaaatacggctaaaatatgcttttggtccctgcaaatataacgagtttgggttttggtccctggtaaaaaaaaaatttgaattccatccctgcaaa 120956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 119594 - 119652
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||| ||||| ||||||||||||||  ||||||| ||||| |||||| ||||    
T  119594 gctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccctggtaa 119652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 42359404 - 42359317
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||| ||||||||||||||  || ||||| |||| |||||| |||||| |||  |||||||||| ||||||||||    
T  42359404 gctaaaatatgtttttggtccctgcaaatatagcgagtttggattttggtccctggtaaaaaaaacttttgaaaaacgtccctgcaaa 42359317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 33137295 - 33137226
Alignment:
Q  105 agaaatatagctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    |||||||  ||||||||||||||||||||||||||||||||  || |||||||||| |||||| ||||||    
T  33137295 agaaataaggctaaaatatgtttttgatccctgcaaatatagcgagtttgggttttagtccctggtaaaa 33137226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 17371901 - 17371845
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  17371901 taaaatatgcttttgatccctgcaaatataacgaatttgggttttggtccctggtaa 17371845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 44705300 - 44705359
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||| || |||||||||    
T  44705300 gctaaaatatgtttttggtctctgcaaatatagtgaatttgggttttggttcctagtaaa 44705359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 22204056 - 22204126
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttg 184  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||| |||||| |||||| ||| |||||    
T  22204056 gctaaaatatgtttttggtccctgcaaatatagcgagtttgggttttagtccctggtaaaaaaaaaatttg 22204126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 32699378 - 32699285
Alignment:
Q  108 aatatagctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||| ||||||||||||||||| |||||| |||||||  || |||||||||| ||||||  ||||| ||| ||||||||  | ||||||||||    
T  32699378 aatatggctaaaatatgtttttggtccctgtaaatatagcgagtttgggttttggtccctcataaaaaaaaaatttgaaattcgtccctgcaaa 32699285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 3880554 - 3880494
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||||||||| | ||||||||||||  || |||||||||| |||||||||||||    
T  3880554 gctaaaatatgtttttggttcctgcaaatatagcgagtttgggttttggtccctagtaaaa 3880494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 16573480 - 16573546
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||| ||| || |||||||| |||||||    
T  16573480 aaaatagtctttggccccactttattgatgatttggcacatttatgcctacgtggcattcgctgact 16573546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 29059714 - 29059786
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaa 186  Q
    ||||||||||||||||  ||||||||||||||| ||||||| |||   |||||| |||||| ||| |||||||    
T  29059714 gctaaaatatgtttttcgtccctgcaaatataacgaatttgagttccggtccctggtaaaaaaaaaatttgaa 29059786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 41935126 - 41935082
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttt 160  Q
    ||||||||||||||| ||||||||||||||| || ||||||||||    
T  41935126 taaaatatgtttttggtccctgcaaatataacgagtttgggtttt 41935082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 3879087 - 3879146
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    ||||||||||| ||||||||||||||||||||  || ||||| |||| |||||| |||||    
T  3879087 gctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggtaaa 3879146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 41933819 - 41933894
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaa 189  Q
    ||||||||||| ||||| || |||||||||||  || |||||||||| |||| |||||||| ||| | ||||||||    
T  41933819 gctaaaatatgattttggtctctgcaaatatagcgagtttgggttttggtccttagtaaaaaaaaaaattgaaaaa 41933894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 42358033 - 42358120
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||||||||| ||||||||||||||   | |||| |||||  ||||| |||||| |||  |||||||  ||||||||||||    
T  42358033 gctaaaatatgtttttggtccctgcaaatataggaagtttgagttttgatccctggtaaaaaaaacttttgaaatccatccctgcaaa 42358120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 45618286 - 45618372
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||| ||||| ||||| ||||||||||||||  || |||||||||| |||||| |||||| ||| | |||||  |||||||||||||    
T  45618286 gctaatatatgcttttggtccctgcaaatatagcgagtttgggttttggtccctggtaaaa-aaaaaattgaattacatccctgcaaa 45618372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 32698000 - 32698046
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttt 160  Q
    ||||||||||| ||||||||||||||||||||  |||||| ||||||    
T  32698000 gctaaaatatgattttgatccctgcaaatatagcgaatttaggtttt 32698046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 144
Target Start/End: Original strand, 33134892 - 33134922
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatat 144  Q
    |||||||||||||||||||||||||||||||    
T  33134892 gctaaaatatgtttttgatccctgcaaatat 33134922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 38167829 - 38167779
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccc 166  Q
    |||||||| |||||| ||||| ||||||||| ||||||||||||| |||||    
T  38167829 taaaatatatttttggtccctacaaatataacgaatttgggttttagtccc 38167779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 41935025 - 41934983
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacattt 259  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||    
T  41935025 aaaatagtccttggacccactttgttgctgatttgacacattt 41934983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 19675678 - 19675625
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccct 167  Q
    ||||||||||| ||||| ||||||||||||||| || ||||| |||| ||||||    
T  19675678 gctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtccct 19675625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 6353642 - 6353606
Alignment:
Q  109 atatagctaaaatatgtttttgatccctgcaaatata 145  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  6353642 atatagctaaaatatggttttggtccctgcaaatata 6353606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 17326788 - 17326732
Alignment:
Q  118 aaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||| ||||| ||||| ||||||||  | ||||||||||| |||||||||||||    
T  17326788 aaatatggttttggtccctccaaatatagggcatttgggttttggtccctagtaaaa 17326732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 29415654 - 29415690
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtc 253  Q
    |||||||||||||||||||| |||||| |||||||||    
T  29415654 aaaatagtccttggacccaccttcttgctgatttgtc 29415690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 55542637 - 55542565
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaa 186  Q
    |||||||| |||||||||||||||||||||||     |||||| ||| |||||| |||||| ||| |||||||    
T  55542637 gctaaaatctgtttttgatccctgcaaatatagcatgtttgggatttggtccctggtaaaaaaaaaatttgaa 55542565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 345955 - 345897
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||    
T  345955 gctaaaatatgtttttggtccctgcaaatatagcgaatttgggttttggtccctagtaa 345897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 345041 - 345107
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgact 283  Q
    |||||||||||||| |||||||| || |||||||| ||||||| ||| || |||||||| |||||||    
T  345041 aaaatagtccttggccccactttattaatgatttggcacatttatgcctacgtggcattcgctgact 345107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 374336 - 374394
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaa 172  Q
    ||||||||||| ||||||||||||||||||||  || |||||||||| |||||| ||||    
T  374336 gctaaaatatgattttgatccctgcaaatatagcgagtttgggttttggtcccttgtaa 374394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 1091 - 1022
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatg 286  Q
    ||||| |||||||| |||||||| ||||||||||| ||||||| ||| ||||||||||| ||||||||||    
T  1091 aaaattgtccttggccccactttattgatgatttggcacatttctgcctatgtggcattcgctgactatg 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 10316 - 10403
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| ||||||||||||||  ||||||| ||||| |||| | |||||| || | |||||||||| ||||||||||    
T  10316 gctaaaatatgcttttggtccctgcaaatatagcgaatttgagttttggtccttggtaaaaaaattttttgaaaaacgtccctgcaaa 10403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 11580 - 11521
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    ||||||||||||||||| ||||||||||||||  | ||||||||||| |||||| |||||    
T  11580 gctaaaatatgtttttggtccctgcaaatatagcgtatttgggttttggtccctggtaaa 11521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 309
Target Start/End: Original strand, 10418 - 10510
Alignment:
Q  217 aaaatagtccttggacccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacacgtgtcatcca 309  Q
    |||||||||| ||| |||||||| | ||||||||||||||||| ||||||  |||||   ||||||  ||||||| |||||| ||| ||||||    
T  10418 aaaatagtccctggtcccactttttcgatgatttgtcacatttatgcatacttggcagatgctgacggtgcaaacatgtacatgtggcatcca 10510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 29730 - 29817
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||||| ||||| |||||||||||| || || ||||| |||| |||||| |||||| ||| ||||||||  ||||||||||||    
T  29730 gctaaaatatgcttttggtccctgcaaataaaacgagtttggattttggtccctggtaaaaaaaaaatttgaaattcatccctgcaaa 29817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 30965 - 30905
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| |||||||||||||| ||| |||||||||| |||||| ||||||    
T  30965 gctaaaatatggttttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 30905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 489 - 429
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaa 174  Q
    ||||||||||| ||||| |||||||||||||| ||| |||||||||| |||||| ||||||    
T  489 gctaaaatatgattttggtccctgcaaatatagtgagtttgggttttggtccctggtaaaa 429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 9923 - 9982
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaa 173  Q
    ||||||||||| ||||||||||||||||||||  || ||||| |||| |||||| |||||    
T  9923 gctaaaatatgcttttgatccctgcaaatatagcgagtttggattttggtccctggtaaa 9982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 1863 - 1948
Alignment:
Q  116 taaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccctagtaaaagaaatatttgaaaaacatccctgcaaa 201  Q
    ||||||||| ||||| ||||||||||||||  || |||| |||||  |||||||||||| |||  |||||||  ||||| ||||||    
T  1863 taaaatatgattttggtccctgcaaatatagcgagtttgagttttgatccctagtaaaaaaaagttttgaaattcatccatgcaaa 1948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 202580 - 202632
Alignment:
Q  114 gctaaaatatgtttttgatccctgcaaatataatgaatttgggtttttgtccc 166  Q
    ||||||||||| ||||| ||||||||||||||| || ||||| |||| |||||    
T  202580 gctaaaatatgcttttggtccctgcaaatataacgagtttggattttggtccc 202632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University