View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_high_22 (Length: 409)
Name: NF14297_high_22
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 3452827 - 3452488
Alignment:
| Q |
11 |
gaagaaacaaacgataaccagcgggagagtgagggagggtatgtttatgcggtgtcccactattgttaggtttttcccacatttgatatttttgacttta |
110 |
Q |
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| T |
3452827 |
gaagaaacaaacgataaccagcgggaaagtgagggagggtatgtttgtgcggtgtcccactattattagctttttcccacattcaatatttttgacttta |
3452728 |
T |
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| Q |
111 |
tatataatgtttgttagattcatgaaacaggtttatgtgatgtgagagaaacaagagaaaaaatgggtaaaggcggagg------agaagatgaagaagg |
204 |
Q |
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| T |
3452727 |
tatataatgtttgttagattcatgaaacaggtttatgtgatgtgagagaaacaagagaaaaaatgggtaaaggcggaggcggaggagaagatgaagaagg |
3452628 |
T |
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| Q |
205 |
agtaatgatggctggtgatttcttttggtcatataccgatgaacctcatgcttctcgccgtcgtcagatcctctccaaataccctcatattaaacaactc |
304 |
Q |
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| T |
3452627 |
agtaatgatggctggtgatttcttttggtcatataccgatgaacctcatgcttctcgccgtcgtcagatcctctccaaataccctcatattaaacaactc |
3452528 |
T |
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| Q |
305 |
tttggtcctgatcccttcgcattcttcaaggttcgtcgtc |
344 |
Q |
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| T |
3452527 |
tttggtcctgatcccttcgcattcttcaaggttcgtcgtc |
3452488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 389
Target Start/End: Complemental strand, 3452455 - 3452423
Alignment:
| Q |
357 |
agatctctaatgttacttcttagtatcgttgtt |
389 |
Q |
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| T |
3452455 |
agatctctaatgttacttcttattatcgttgtt |
3452423 |
T |
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