View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_high_23 (Length: 390)
Name: NF14297_high_23
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 52106864 - 52106490
Alignment:
| Q |
1 |
caagtgtcaccacgaaagtgctatgtacagtaaagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaa |
100 |
Q |
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| T |
52106864 |
caagtttcaccaccaaagtgctatgcacagtgaagattcttttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacactttaa |
52106765 |
T |
|
| Q |
101 |
ctccggattttgtggaaaacaggttggatcatggtttaaccaaccaatcagaaacgttcgtgaagaattcttgatgtattttgtcgctatatccatcatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52106764 |
ctcctgattttgtggaaaacaggttggatcatggtttaaccaaccaatcaaaaacgttcgtgaagaatttttgatgtattttgtcgctatatccatcatt |
52106665 |
T |
|
| Q |
201 |
ttccataaagaatatagaacgaaaattcttcttcaaaaaacatagaacaaaaattggagttctagtaaagtaatttatatcacgatttagaatattgtaa |
300 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
52106664 |
ttccattaagaacatagaacgaaaattcttcttcaaaaaacatggaacaaaaattggagttctagtatagtaatttatatcacgatttaggatattgtaa |
52106565 |
T |
|
| Q |
301 |
gtaagtattttatgaataaaattggatgttaaactatcatttctcaataactaaagttttgccaaccaaaagaat |
375 |
Q |
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| T |
52106564 |
gtaagtattttatgaataaaattggatgttaaactatcatttctcaataactaaagttttgccaatcaaaagaat |
52106490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 4891257 - 4891089
Alignment:
| Q |
33 |
aagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtggaaaacaggttggatcat |
132 |
Q |
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| T |
4891257 |
aagattccttctcgagaaattcacgaagcctacgtgtcttgcttataagaaaaagagaaacgcttcaactccagattttatggaaaacaggttggatcat |
4891158 |
T |
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| Q |
133 |
ggtttaaccaaccaatcagaaacgttcgtgaagaattcttgatgtattttgtcgctatatccatcattt |
201 |
Q |
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| T |
4891157 |
ggtttaaccaaccaatcaaaaatgttcgtgaagaatttttgatatattttaatgctatatctatcattt |
4891089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 35327359 - 35327191
Alignment:
| Q |
33 |
aagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtggaaaacaggttggatcat |
132 |
Q |
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|||||||||| |||||||||||||| ||| ||| |||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||||| || |||| |
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| T |
35327359 |
aagattccttctcgagaaattcacgaaaccggcgtgtcttgcgtataaggaaaagagcaacgcttcaactctggattttatggaaaacaggtagggtcat |
35327260 |
T |
|
| Q |
133 |
ggtttaaccaaccaatcagaaacgttcgtgaagaattcttgatgtattttgtcgctatatccatcattt |
201 |
Q |
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| T |
35327259 |
actttaaccaaccaatcaaaaacgtttgtgaagaatttttaatatattttgtcgctatatccatcattt |
35327191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 43388379 - 43388493
Alignment:
| Q |
90 |
aaacacttcaactccggattttgtggaaaacaggttggatcatggttt---aaccaaccaatcagaaacgttcgtgaagaattcttgatgtattttgtcg |
186 |
Q |
| |
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|||| ||||||||||| ||||| ||||||||| ||||| |||||| || | |||||||||| |||| || ||||||||||||||| |||| ||| |
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| T |
43388379 |
aaacgcttcaactccgtattttatggaaaacaagttgggtcatggcttgtccaacaaccaatcaaaaacatttgtgaagaattcttgaaatattcaatcg |
43388478 |
T |
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| Q |
187 |
ctatatccatcattt |
201 |
Q |
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|||||| |||||||| |
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| T |
43388479 |
ctatattcatcattt |
43388493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 33511692 - 33511591
Alignment:
| Q |
33 |
aagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtggaaaacaggttggatcat |
132 |
Q |
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|||||||||| | |||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||| ||| ||| ||||||||||||||| |||| |
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| T |
33511692 |
aagattccttcccgagaaattcacgaagccgacgtgtcttgcgtataagaaaaagagaaacgcttcaactctggaatttatggaaaacaggttgggtcat |
33511593 |
T |
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| Q |
133 |
gg |
134 |
Q |
| |
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|| |
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| T |
33511592 |
gg |
33511591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 33511325 - 33511249
Alignment:
| Q |
129 |
tcatggtttaaccaaccaatcagaaacgttcgtgaagaattcttgatgtattttgtcgctatatccatcattttcca |
205 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
33511325 |
tcatggtttaaccaaccaataaaaaacgttcgtgaaaaattcttgatatattttgtcgctatatccatcattttcca |
33511249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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