View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14297_high_26 (Length: 337)
Name: NF14297_high_26
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 12862678 - 12862356
Alignment:
| Q |
1 |
acttaagatttctgcgatgagctcataaattagctccatctttaaataatttgtttgctctgaattcatcttatagaatggagaagccttttaagtatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12862678 |
acttaagatttctgcgatgagctcataaattagctccatctttaaataatttgttcgctctgaattcatcttatagaatggagaagccttttaggtatca |
12862579 |
T |
|
| Q |
101 |
tttaaagaaacttgaaaatatttttcttaaagataaaatgtacttaaacattaagcaaataaaattatccgatctcaagtttttatttcaagtaaatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12862578 |
tttaaagaaacttgaaaatatttttcttaaagataaaatgtacttaaacattaagcaaataaaattatccgatctcaagtttttatttcaagtaaatgaa |
12862479 |
T |
|
| Q |
201 |
tcaaatagacatatt-aatatttcgctcctttaattaaatatcgaacaaacaactatatgagatcatgaacgtagacaattttatcattatagttcttaa |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12862478 |
tcaaatagacatattgaatatttcgctcctttaattaaatatcgaacaaacaactatttgaggtcatgaacgtagacaattttatcattatagctcttaa |
12862379 |
T |
|
| Q |
300 |
atttatcaaaattgtaaacgtgt |
322 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
12862378 |
atttatcaaaattgcaaacgtgt |
12862356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 13124973 - 13125032
Alignment:
| Q |
10 |
ttctgcgatgagctcataaattagctccatctttaaataatttgtttgctctgaattcat |
69 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13124973 |
ttctgtgatgagctcataaattagctccatctttaaataatttgtttgctctgaactcat |
13125032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 12842913 - 12842969
Alignment:
| Q |
109 |
aacttgaaaatatttttcttaaagataaaatgtacttaaacattaagcaaataaaat |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
12842913 |
aacttgaaaatatttttcttaaagataaaatgtacctaaaaattaagcaaataaaat |
12842969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 12842973 - 12843038
Alignment:
| Q |
227 |
cctttaattaaatatcgaacaaacaactatatgagatcatgaacgtagacaa-ttttatcattata |
291 |
Q |
| |
|
||||||| |||||| |||||||||||||| | || ||||||| |||||||| ||||||||||||| |
|
|
| T |
12842973 |
cctttaaagaaatattgaacaaacaactattttagttcatgaatgtagacaatttttatcattata |
12843038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 20745867 - 20745831
Alignment:
| Q |
281 |
ttatcattatagttcttaaatttatcaaaattgtaaa |
317 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20745867 |
ttatcattatagttcttagatttatcaaaattgtaaa |
20745831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University