View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14297_high_3 (Length: 684)

Name: NF14297_high_3
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14297_high_3
NF14297_high_3
[»] chr1 (15 HSPs)
chr1 (14-360)||(5308654-5309001)
chr1 (14-360)||(23949710-23950056)
chr1 (49-361)||(42677238-42677551)
chr1 (19-358)||(23084754-23085092)
chr1 (14-361)||(50952404-50952754)
chr1 (18-361)||(34553712-34554055)
chr1 (21-209)||(22065193-22065381)
chr1 (24-200)||(2601205-2601380)
chr1 (308-361)||(23723127-23723180)
chr1 (20-76)||(6293939-6293995)
chr1 (20-80)||(16854872-16854932)
chr1 (290-361)||(22065041-22065111)
chr1 (20-71)||(28705914-28705965)
chr1 (152-213)||(8059849-8059910)
chr1 (156-212)||(16855004-16855060)
[»] chr3 (12 HSPs)
chr3 (14-361)||(54346747-54347095)
chr3 (14-334)||(27156033-27156354)
chr3 (43-318)||(43812988-43813263)
chr3 (21-361)||(46428575-46428915)
chr3 (21-203)||(42794505-42794687)
chr3 (21-213)||(54812236-54812428)
chr3 (21-184)||(43912269-43912432)
chr3 (18-108)||(51841288-51841377)
chr3 (20-76)||(37503012-37503068)
chr3 (290-361)||(54812088-54812158)
chr3 (324-361)||(52726490-52726527)
chr3 (20-76)||(43328829-43328885)
[»] chr5 (14 HSPs)
chr5 (14-361)||(18258978-18259326)
chr5 (14-357)||(22540222-22540566)
chr5 (14-335)||(34080606-34080925)
chr5 (21-213)||(4560304-4560496)
chr5 (21-213)||(18934072-18934264)
chr5 (21-211)||(18883400-18883590)
chr5 (263-337)||(13236721-13236796)
chr5 (20-76)||(14024858-14024914)
chr5 (156-212)||(32386547-32386603)
chr5 (18-137)||(32216808-32216927)
chr5 (431-464)||(37687861-37687894)
chr5 (156-212)||(239963-240019)
chr5 (156-212)||(14024994-14025050)
chr5 (20-76)||(32386411-32386467)
[»] chr4 (14 HSPs)
chr4 (14-361)||(34389644-34389992)
chr4 (14-357)||(36894255-36894603)
chr4 (21-211)||(47597580-47597770)
chr4 (138-213)||(4228307-4228382)
chr4 (21-108)||(43270883-43270970)
chr4 (20-76)||(1369357-1369413)
chr4 (20-76)||(28945496-28945552)
chr4 (290-361)||(44307718-44307789)
chr4 (328-361)||(28099577-28099610)
chr4 (156-212)||(44307583-44307639)
chr4 (133-178)||(11896076-11896121)
chr4 (156-212)||(1217218-1217274)
chr4 (156-212)||(1369493-1369549)
chr4 (156-212)||(28945360-28945416)
[»] chr2 (19 HSPs)
chr2 (14-361)||(13186900-13187247)
chr2 (100-361)||(40426006-40426268)
chr2 (14-254)||(7305027-7305267)
chr2 (397-667)||(33889461-33889726)
chr2 (47-317)||(37307177-37307448)
chr2 (73-361)||(6598990-6599280)
chr2 (14-335)||(40190284-40190606)
chr2 (490-667)||(33885750-33885930)
chr2 (21-213)||(17290048-17290240)
chr2 (290-361)||(7304957-7305027)
chr2 (20-76)||(42865840-42865896)
chr2 (128-230)||(26381237-26381339)
chr2 (20-76)||(11995863-11995919)
chr2 (20-76)||(24126543-24126599)
chr2 (133-176)||(6372668-6372711)
chr2 (290-361)||(24126257-24126328)
chr2 (18-95)||(26381377-26381454)
chr2 (431-464)||(33259776-33259809)
chr2 (156-212)||(42865976-42866032)
[»] chr8 (13 HSPs)
chr8 (14-359)||(1636010-1636356)
chr8 (14-361)||(26616565-26616911)
chr8 (14-361)||(456201-456547)
chr8 (21-213)||(44145724-44145915)
chr8 (21-211)||(38560608-38560798)
chr8 (290-361)||(45093635-45093706)
chr8 (20-76)||(33373121-33373177)
chr8 (156-212)||(42000334-42000390)
chr8 (20-76)||(45093364-45093420)
chr8 (291-360)||(33373393-33373461)
chr8 (291-335)||(9469177-9469221)
chr8 (290-346)||(42000469-42000525)
chr8 (156-212)||(45093500-45093556)
[»] chr7 (11 HSPs)
chr7 (14-361)||(8019584-8019931)
chr7 (14-357)||(48618946-48619290)
chr7 (23-357)||(29213572-29213907)
chr7 (21-213)||(24473467-24473659)
chr7 (138-213)||(24468636-24468711)
chr7 (20-76)||(46045830-46045886)
chr7 (156-212)||(5350053-5350109)
chr7 (156-212)||(8035770-8035826)
chr7 (20-76)||(38110802-38110858)
chr7 (21-76)||(8035635-8035690)
chr7 (156-212)||(38110666-38110722)
[»] chr6 (4 HSPs)
chr6 (21-108)||(1223055-1223142)
chr6 (290-361)||(1222820-1222890)
chr6 (162-213)||(1222968-1223019)
chr6 (431-464)||(4295695-4295728)
[»] scaffold0003 (1 HSPs)
scaffold0003 (21-108)||(355922-356010)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 5308654 - 5309001
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  5308654 attactctcatcttatagtggaaagtgaatcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccg 5308753  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
     |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  5308754 tatccggaatctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 5308853  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttc 312  Q
    ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  5308854 acatatcattttaattttcttgtgttggagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccaggacttgcatgcctaggaatgttc 5308953  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgta 360  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  5308954 gattaacttcttaattttgtttacttttgggctttgccctctcttgta 5309001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 23949710 - 23950056
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23949710 attaatctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccg 23949809  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
     |||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  23949810 tatccggaagctgctgaagatgagttagaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 23949909  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 312  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |  || ||||||||||||||||||||    
T  23949910 acagatcattttaattttattgtgttggagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccggggtttgcatgcctaggaatgttc 23950009  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgta 360  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||    
T  23950010 gattaacttcttaattttgttttcttttgggcttt-acctctcttgta 23950056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 49 - 361
Target Start/End: Original strand, 42677238 - 42677551
Alignment:
Q  49 attttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaagctgttgaagatgagttggaatgttc 148  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||    
T  42677238 attttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgtatccggaagctgctgaagatgagttggaatgttc 42677337  T
Q  149 aactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaattttctagtgttggagtctcc 248  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  42677338 aactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacagatctttttaattttctagtgttggagtctcc 42677437  T
Q  249 tgcttgtgaggtcaaaagaatcatttttgatgatttatct-aggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggcttt 347  Q
    | |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42677438 tccttgtgaggtcaaaagaatcctttttgatgatttatctggggcttgcatgcctaggaatattcgattaacttcttaattttgttttcttttgggcttt 42677537  T
Q  348 gccctctcttgtac 361  Q
    ||||||||||||||    
T  42677538 gccctctcttgtac 42677551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 23085092 - 23084754
Alignment:
Q  19 tctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatcc 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  23085092 tctcatcttatagtggaaagtgatttaaagattttgatcgacatgatttttgataatttcaagttcaatgggaatattcatgttttagtttaccggatcc 23084993  T
Q  119 agaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacaga 218  Q
     ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||  |    
T  23084992 ggaagctgctgaagatgagttggaatgttcaactcaaccatatttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacgta 23084893  T
Q  219 tcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttcgatta 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||  | |||||||| ||||||||||||||||||    
T  23084892 tcattttaattttctagtgttggagtctcctccttgtgaggtcaaaataatcatttttgatgatttatccggagcttgcatacctaggaatgttcgatta 23084793  T
Q  318 acttcttaattttgttttcttttgggctttgccctctcttg 358  Q
    ||| ||||||||| |||  ||||||||||||||||||||||    
T  23084792 actccttaattttattt--ttttgggctttgccctctcttg 23084754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 50952754 - 50952404
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  50952754 attactctaatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcatgttttagtttaccg 50952655  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||    
T  50952654 gatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaagaaaataggagtgctgattggctcgctaatataagcatttct 50952555  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggt--caaaagaatcatttttgatgatttatct-aggcttgcatgcctaggaatgt 310  Q
    ||||||| ||||||||||||||||||||||| |||| |||||||  |   ||||| ||||||||| |||||||||||  ||||||||| |||||||||||    
T  50952554 acagatctttttaattttctagtgttggagtatcctccttgtgaaattaaaaaagtatcattttttatgatttatctggggcttgcatacctaggaatgt 50952455  T
Q  311 tcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  50952454 tcgattagcttcttaattttgttttcttttggactttgccctctcttgtac 50952404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 34554055 - 34553712
Alignment:
Q  18 ttctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatc 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | ||  ||||||||||| || |||||||| ||||||||    
T  34554055 ttctcatcttatagtggaaagtgattcaaagatttttatcgacatgatttctgataattttgaatttgatgggaatatttctattttagttcactggatc 34553956  T
Q  118 cagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacag 217  Q
    |||||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||||||||| | ||||| ||||     
T  34553955 cagaagatgctgaagatgagttagaatgttcaactcaaccatacttggtgtgaaggaaatagaagtgctgattgactcgctaatttaaacatttatacat 34553856  T
Q  218 atcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttcgatt 316  Q
    |||| ||||||||||| ||||||||||||||| || |||||||| ||| |||| |||||||||||||||| || ||||||||||||| ||||||||||||    
T  34553855 atcactttaattttcttgtgttggagtctcctcctagtgaggtccaaaaaatcctttttgatgatttatccagagcttgcatgcctatgaatgttcgatt 34553756  T
Q  317 aacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    | ||| ||| |||| |||| ||||||||||||| |||||||||||    
T  34553755 agcttgttagtttt-tttttttttgggctttgctctctcttgtac 34553712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 22065381 - 22065193
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  22065381 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 22065282  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcat 209  Q
    | |||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||    
T  22065281 aggctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcat 22065193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 2601205 - 2601380
Alignment:
Q  24 tcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaag 123  Q
    ||||||||||||||||||||| ||||| || |||||||||| |||||| || |||||||| |||| ||||||  || |||||||| |||  |||  ||||    
T  2601205 tcttatagtggaaagtgattctaagatatt-atcgacatgaattctgacaaattcaagtttaatgagaatataactattttagttcactatatcatgaag 2601303  T
Q  124 ctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaa 200  Q
    ||| |||| |||| |||| |||| ||| |||| ||| ||||||   ||  |||||| |||||| ||||||| |||||    
T  2601304 ctgctgaacatgaattgggatgtgcaaatcaatcattcttggcacaaacaaaatataagtgcttattggcttgctaa 2601380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 23723127 - 23723180
Alignment:
Q  308 tgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||| |||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  23723127 tgttcaattagcttcttaattctgttttctttttggctttgccctctcttgtac 23723180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 6293939 - 6293995
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  6293939 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 6293995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 16854872 - 16854932
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaa 80  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| || | ||||||||    
T  16854872 ctcatcttatagtggagagtgactcaaagatcttggtcgacatgattactaaaaatttcaa 16854932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 22065111 - 22065041
Alignment:
Q  290 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||||||||||||||||||| || |||| ||| || |||  |||||| |||||||||||||||| ||||||    
T  22065111 ggcttgcatgcctaggaatgtccggttaatttcgtagtttc-ttttctcttgggctttgccctctattgtac 22065041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 28705914 - 28705965
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctga 71  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| ||||    
T  28705914 ctcatcttatagtggagagtgaatcaaagatcttggtcgacatgattactga 28705965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 8059910 - 8059849
Alignment:
Q  152 tcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||||||| ||||| || |||||||  |||||||||||||| |||||||| ||| |||||    
T  8059910 tcaaccatacctggcgcgagggaaatagaagtgctgattggcttgctaattttagcttttct 8059849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 16855004 - 16855060
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  16855004 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 16855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 54346747 - 54347095
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  54346747 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccg 54346846  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
     |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  54346847 tatccggaagctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 54346946  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 312  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |  ||||| |||||||||||||||||    
T  54346947 acagatcattttaattttcttgtgctggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccggggcttacatgcctaggaatgttc 54347046  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54347047 gattaacttcttaattttgtttttttttgggctttgccctctcttgtac 54347095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 27156354 - 27156033
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  27156354 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagtttaatgggaatattcctgttttagtttaccg 27156255  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27156254 gatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttcagcatttct 27156155  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttc 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||  | ||||||||||||||||| ||||    
T  27156154 acagatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaagaatcctttttaatgatttatccggagcttgcatgcctaggaacgttc 27156055  T
Q  313 gattaacttcttaattttgttt 334  Q
    |||||||||||||| |||||||    
T  27156054 gattaacttcttaagtttgttt 27156033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 43 - 318
Target Start/End: Original strand, 43812988 - 43813263
Alignment:
Q  43 tcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaagctgttgaagatgagttgga 142  Q
    ||||||||||||||||| |||||||||||||||||||| |  ||||| ||||||| ||||||||||||| ||||||| ||| ||||| |||||||||| |    
T  43812988 tcaaagattttgatcgatatgatttctgataatttcaaatgtaatggcaatattcatgttttagtttaccggatccaaaagttgttgcagatgagttgaa 43813087  T
Q  143 atgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaattttctagtgttgga 242  Q
    |||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||| || |||||||||| |||||  ||||||||  |  ||||| |    
T  43813088 atgttcaactcaaccataattggcgtgaaggaaattggagtgctgattgactcgctaacttaagcatttctatagatc-gtttaatttgttgttgttgaa 43813186  T
Q  243 gtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatc--taggcttgcatgcctaggaatgttcgattaa 318  Q
    ||||||| || |||||||| ||  | |||||||||||||||||||  || | ||| ||||||||||||||||||||||    
T  43813187 gtctcctcctagtgaggtccaataactcatttttgatgatttatccgta-gtttgtatgcctaggaatgttcgattaa 43813263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 361
Target Start/End: Original strand, 46428575 - 46428915
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||||| ||| |||||||| |  | |||  |    
T  46428575 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttcatcgtatcagg 46428674  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatc 220  Q
    |||||| |||  |||  |||| |||| ||| ||||||||||||||| |||||||||||  ||||| |||||||| |||||||| ||||||| |    |||    
T  46428675 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcatgaaggaaatagaagtgccgattggcttgctaattttagcatttatgtgaatc 46428774  T
Q  221 attttaattttctagtgttggagtctcctgcttgtgaggt-caaaagaatcatttttgatgatttatct-aggcttgcatgcctaggaatgttcgattaa 318  Q
    |||| |||||  |  | |||||| ||||| ||  |||| | | ||||  |||| ||||||||| | ||  |||||||||||||||||||||| || ||||    
T  46428775 atttgaatttgattattttggagactcctcctattgagcttcgaaagc-tcatgtttgatgatatttccgaggcttgcatgcctaggaatgtccgtttaa 46428873  T
Q  319 cttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
     ||| | | ||| |||||| |||||||||||||||| ||||||    
T  46428874 tttcgt-agtttcttttctcttgggctttgccctcttttgtac 46428915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 42794505 - 42794687
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| ||||||||||| ||| |||||||| |  | |||  |    
T  42794505 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttaatgggaatatgcctattttagttcatcgtatcagg 42794604  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaattt 203  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| ||||||||    
T  42794605 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattt 42794687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 54812428 - 54812236
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  54812428 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 54812329  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||| |||  |||  || | |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  54812328 aagctgctgagaatggattagcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 54812236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 43912432 - 43912269
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    |||||||||||| |||||||| |||||||| |||||| ||||||||||||| || |||||||| |||||||||||  || |||||| | |  | |||  |    
T  43912432 tcatcttatagttgaaagtgactcaaagatattgatcaacatgatttctgagaagttcaagtttaatgggaatatctctattttagctcatcgtatcagg 43912333  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtg 184  Q
    ||||||||||| |||  |||| | || ||| |||||||||  ||||| |||| |||||| ||||    
T  43912332 aagctgttgaaaatggattggcaagtgcaaatcaaccatatctggcgcgaagaaaatataagtg 43912269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 51841377 - 51841288
Alignment:
Q  18 ttctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtt 108  Q
    |||||||||||||||||| ||||| |||||| | ||||||||||| | |||||| |||||||| ||||| |||| ||| ||| ||||||||    
T  51841377 ttctcatcttatagtggagagtgactcaaagttattgatcgacat-acttctgacaatttcaatttcaaagggactatccctattttagtt 51841288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 37503012 - 37503068
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    ||||| |||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  37503012 ctcattttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 37503068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 54812158 - 54812088
Alignment:
Q  290 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||||||||||||||||||| || |||| |||  | |||  ||||||||||||||||||||||| ||||||    
T  54812158 ggcttgcatgcctaggaatgtccggttaatttcgcagtttc-ttttcttttgggctttgccctctattgtac 54812088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 52726527 - 52726490
Alignment:
Q  324 taattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  52726527 taattttattttcttttaggctttgccctctcttgtac 52726490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 43328885 - 43328829
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||| ||| |||| ||||    
T  43328885 ctcatcttatagtggagagtgactcaaagatcttggtcgacataattactgaaaatt 43328829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 18259326 - 18258978
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |    
T  18259326 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataattccaaattcaatgggaatattcttgttttagtttaccg 18259227  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    ||||| ||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||     
T  18259226 gatccggaagctgctgaagataagttgaaatgttcaactcaaccatacctggcgcgaaggaaatatgagtgctgattggctcgctaatttaagcatttcg 18259127  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  18259126 acagatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccggggcttgcatgcctaggaatgttc 18259027  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  18259026 gattagcttctaaattttattttcttttgggctttgccctctcttgtac 18258978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 22540222 - 22540566
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  22540222 attactctcatcttatagttgaaagtgattcaaagattttgatcgacgtgatttctgataatttcaagttcgatggaaatattcctgttttagtttactg 22540321  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||| |||||||||    
T  22540322 gatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtaaaggaaataggagtgttgattgactcgctaatttaagcatttct 22540421  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttc 312  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||  | |||||||||| ||| |||||||    
T  22540422 acagatcatttaaattttctagtgttgaagtctcctccttgtgaggtcaaaagaatcatttttgatgatttatccggagcttgcatgcatagaaatgttc 22540521  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctctt 357  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||    
T  22540522 gattagcttcttaattttgtttttgtttgggctttgccctctctt 22540566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 34080925 - 34080606
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||||| |||||||| |||||||||| || |    
T  34080925 attactctcatcttatagtggaaagtgatttaaagattttgatggatatgatttctgataaattcaagttcaatgcgaatattcttgttttagttcaccg 34080826  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| | ||||| |    
T  34080825 gatccagaagctgctgaagatgggttggaatgttcaactcaaccatacttggcgtgaaggaaacatgagtgttgattggcttgctaatttaaacattttt 34080726  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttc 312  Q
    ||| |||| ||||||||| |||||||||||||||   || |||||||| ||| |||| ||||||||||||||| | | |||||||||||||| |||||||    
T  34080725 acatatcactttaattttatagtgttggagtctc---ctagtgaggtccaaaaaatcctttttgatgatttatttggagcttgcatgcctagaaatgttc 34080629  T
Q  313 gattaacttcttaattttgtttt 335  Q
    |||||  || |||||||||||||    
T  34080628 gattagttttttaattttgtttt 34080606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 4560496 - 4560304
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||||| ||| |||||||| |  | |||  |    
T  4560496 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgaaaagttcaagtttaatgggaatatgcctattttagttcatcgtatcagg 4560397  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||||||||| || |||||||| |||||||||    
T  4560396 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcatttct 4560304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 18934072 - 18934264
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| |||||||||||  | ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  18934072 tcatcttattgtggaaagtgacccgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 18934171  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  18934172 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 18934264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 18883400 - 18883590
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||||||| || || || ||||| ||||||||||| ||| |||||||| | || |||  |    
T  18883400 tcatcttatagtggaaaatgactcaaagatattgatcgacatgatttcggacaagtttaagtttaatgggaatatccctattttagttcattgtatcagg 18883499  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcattt 211  Q
    |||||  |||  |||  |||  |||| ||| |||||||||||||||| ||||||||||    ||| |||||||| |||||||| |||||||    
T  18883500 aagctactgagaatggattgacatgtgcaaatcaaccatacttggcgcgaaggaaatagatatgccgattggcttgctaattttagcattt 18883590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 13236721 - 13236796
Alignment:
Q  263 aaagaatcatttttgatgatttatct-aggcttgcatgcctaggaatgttcgattaacttcttaattttgttttct 337  Q
    |||||||||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  13236721 aaagaatcatttttgatgttttatccgaggcttgcatgcttaggaatgttcgattaacttcttaattttattttct 13236796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 14024858 - 14024914
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  14024858 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 14024914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 32386547 - 32386603
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||||||||| || || ||||||||||| || |||||||||||||||||    
T  32386547 ccatacttggcgtgaaggcaacataagtgctgattgacttgctaatttcagcatttc 32386603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 32216808 - 32216927
Alignment:
Q  18 ttctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatc 117  Q
    ||||||||| |||||||| ||  | ||||||||||||||| |||||||| |||  |||||| | ||||||| |||||| ||| ||||||| ||  | |||    
T  32216808 ttctcatctaatagtggagagcaactcaaagattttgatcaacatgattcctggcaatttccatttcaatgagaatatccctattttagtctagcgtatc 32216907  T
Q  118 cagaagctgttgaagatgag 137  Q
     |||||||  ||||||||||    
T  32216908 tagaagcttctgaagatgag 32216927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 464
Target Start/End: Complemental strand, 37687894 - 37687861
Alignment:
Q  431 aaaaaatctctagattcttctaacataaaatcta 464  Q
    ||||||||||||||||||| ||||||||||||||    
T  37687894 aaaaaatctctagattcttttaacataaaatcta 37687861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 240019 - 239963
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  240019 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 239963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 14024994 - 14025050
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  14024994 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 14025050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 32386411 - 32386467
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    ||||||||||| |||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  32386411 ctcatcttatactggagagtgactcaaagatcttggtcgacatgattactgaaaatt 32386467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 34389992 - 34389644
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  34389992 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcttgttttagtttaccg 34389893  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||  |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |    
T  34389892 gatccgaaagctgctgaagatgatttggaatgttcaactcaaccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaagcattttt 34389793  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 312  Q
    ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |  ||||| |||||||||||||||||    
T  34389792 acatatcattttaattttttagtgttggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccggggcttacatgcctaggaatgttc 34389693  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34389692 gattagcttcttaattttgttttcttttgggctttgccctctcttgtac 34389644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 36894603 - 36894255
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |    
T  36894603 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctaataatttcaagttcaatgtgaatattcctgttttagtttaccg 36894504  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |    
T  36894503 gatccggaagttgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgttgattggctcgctaatttaagcatttat 36894404  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctag-gcttgcatgcctaggaatgttc 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||    
T  36894403 acagatcattttaattttctagtgttggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccggagcttgcatgcctaggaatgttc 36894304  T
Q  313 gattaacttcttaa-ttttgttttctttt---gggctttgccctctctt 357  Q
    ||||| |||||||| ||||||||| ||||   || ||||||||||||||    
T  36894303 gattagcttcttaatttttgtttttttttttgggtctttgccctctctt 36894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 47597770 - 47597580
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||||| ||| |||||||| | || |||  |    
T  47597770 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttcattgtatcagg 47597671  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcattt 211  Q
    |||||| |||  |||  |||| |||| ||| ||||||||||||||| | |||||||||  ||||| |||||||| |||||||| |||||||    
T  47597670 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcataaaggaaatagaagtgccgattggcttgctaattttagcattt 47597580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 4228307 - 4228382
Alignment:
Q  138 ttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  4228307 ttggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 4228382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 43270970 - 43270883
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtt 108  Q
    ||||||||||||  ||||||| || ||||| |||||||||||||||| ||| ||||||||| | ||||| ||||| ||| ||||||||    
T  43270970 tcatcttatagttaaaagtgactctaagatattgatcgacatgatttttgacaatttcaagcttaatggaaatatccctattttagtt 43270883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 1369357 - 1369413
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  1369357 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 1369413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 28945552 - 28945496
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  28945552 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 28945496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 44307718 - 44307789
Alignment:
Q  290 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    |||||||||||||||||| ||||| |||| |||||| |||| ||||  |||| |||||||||||| ||||||    
T  44307718 ggcttgcatgcctaggaacgttcgtttaatttcttagttttctttttctttgtgctttgccctcttttgtac 44307789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 28099577 - 28099610
Alignment:
Q  328 tttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||||||||||||||||||||||||||||||||    
T  28099577 tttgttttcttttgggctttgccctctcttgtac 28099610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 44307583 - 44307639
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||||||||| || |  ||||| |||||||| |||||||||||||||||    
T  44307583 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttc 44307639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 11896121 - 11896076
Alignment:
Q  133 atgagttggaatgttcaactcaaccatacttggcgtgaaggaaata 178  Q
    ||||||||| |||||||  |||||||||| ||||||||||||||||    
T  11896121 atgagttggcatgttcatatcaaccatacatggcgtgaaggaaata 11896076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 1217218 - 1217274
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  1217218 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 1217274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 1369493 - 1369549
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  1369493 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 1369549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 28945416 - 28945360
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  28945416 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 28945360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 13186900 - 13187247
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  13186900 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccg 13186999  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
     |||| ||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  13187000 tatccggaagctgctgaagacgagttggaatgttcaactcaatcatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 13187099  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgattta-tctaggcttgcatgcctaggaatgttc 312  Q
    ||| |||||||||||||| | ||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||  |||||||||||||||||||||||    
T  13187100 acatatcattttaattttattgtgttggagtctcctccttgtgaggtc-aaagaatcctttttgatgatttattcggggcttgcatgcctaggaatgttc 13187198  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13187199 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 13187247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 100 - 361
Target Start/End: Complemental strand, 40426268 - 40426006
Alignment:
Q  100 gttttagtttactggatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgcta 199  Q
    |||||||||||| | |||| ||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||||| |||||||    
T  40426268 gttttagtttaccgtatccggaagctgctgaagatgagttggaatgttcaactcacccatatttggtgtgaaggaaataggagtgctgattgactcgcta 40426169  T
Q  200 atttcagcatttctacagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcat 298  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |  |||||||||    
T  40426168 atttaagcatttctacagatcattttaattttcttgtgctggagtctcctccttgtgaggtcaaaagaatcttttttgatgatttatccggggcttgcat 40426069  T
Q  299 gcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40426068 gcctaggaatgttcgattaacttcttaatcttgttttcttttgggctttgccctctcttgtac 40426006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 7305267 - 7305027
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||| |    
T  7305267 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctaataatttcaagttcaatgagaatattcctgttttactttaccg 7305168  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    ||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  7305167 gatccggaacctgctgaagatgagttggaattttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctctctaatttaagcatttct 7305068  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttg 254  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  7305067 acagatcactttaattttctagtgttggagtctcctccttg 7305027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 397 - 667
Target Start/End: Complemental strand, 33889726 - 33889461
Alignment:
Q  397 gggaaataaacaaacaaaaatagcttcggactctaaaaaatctctagattcttctaacataaaatctannnnnnnnn----aagtcgaaacaatcgcaat 492  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||             |||||||||||| ||||||    
T  33889726 gggaaataaacaaacaaaaataacttcggactctacaaaatctctagattcttctaacataaaatctatatatttttttttaagtcgaaacaagcgcaat 33889627  T
Q  493 catgacgtgagtcgtagggaagcaagtgagaaagttgttgaacattaaaaaccaatctcggcaaactaatttatcagcagccggggttgaattccacaaa 592  Q
    |||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33889626 cat---------cgtagggaagcaagtgagaaagttgttgaacattaaaaaccaatctcggcaaactaatttatcagcagccggggttgaattccacaaa 33889536  T
Q  593 atgttacaacttattaccaagagacaataatacataacaatagaaaactaaaagctgtaattagtcctaaaccat 667  Q
    ||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  33889535 atgttacaacttattaccaagagacaataatgcataacaatagaattctaaaagctgtaattagtcctaaaccat 33889461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 47 - 317
Target Start/End: Complemental strand, 37307448 - 37307177
Alignment:
Q  47 agattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaagctgttgaagatgagttggaatgt 146  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||   ||| ||  |||||||||||| |||||    
T  37307448 agattttgatcgacatgatttctgataatttcaagttcaatgagaatattcctgttttagtttaccggatctgaaagttgccgaagatgagttgaaatgt 37307349  T
Q  147 tcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaattttctagtgttggagtct 246  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| || ||||||||||| ||||| |||||||| ||| |||||||||||    
T  37307348 tcaactcaaccatacttgacgtgaaggaaataggagtgctgattggctcgttaacttaagcatttctacggatcactttaatttactaatgttggagtct 37307249  T
Q  247 cctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttcgatta 317  Q
    ||| || | |||||| |||||||| |||| ||||||||||| ||| ||||||||||||||||| ||||||||    
T  37307248 ccttctagcgaggtccaaagaatccttttagatgatttatccaggacttgcatgcctaggaatcttcgatta 37307177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 73 - 361
Target Start/End: Original strand, 6598990 - 6599280
Alignment:
Q  73 aatttcaagttcaatgggaatattcctgttttagtttactggatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaag 172  Q
    |||||||||||||||||||||||||||||||||||| || |||||| |||| || ||||||||| ||||||||||||||||||||||| |||||||||||    
T  6598990 aatttcaagttcaatgggaatattcctgttttagttcaccggatccggaagttgctgaagatgaattggaatgttcaactcaaccataattggcgtgaag 6599089  T
Q  173 gaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcat 272  Q
    |||||| |||||||||||||||||||||||| |||||||||||| |||| ||| ||||| ||||||||||||||||| || |||||||| ||| |||  |    
T  6599090 gaaataagagtgctgattggctcgctaatttaagcatttctacatatcactttgattttttagtgttggagtctcctcctagtgaggtccaaaaaatact 6599189  T
Q  273 ttttgatgatttat-ctaggcttgcatgcctaggaatgttcgattaacttcttaattt-tgttttcttttgggctttgccctctcttgtac 361  Q
    |||||||||||||| |  |||||||||||||| ||||||||| ||| ||| ||| ||| | |||| |||||||||||||| ||| ||||||    
T  6599190 ttttgatgatttatccggggcttgcatgcctaagaatgttcgtttagctttttagtttgtttttttttttgggctttgccatcttttgtac 6599280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 40190606 - 40190284
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||   |||||||| |||||||  ||      
T  40190606 attactctcatcttatagtggaaagtgattcaaagattttgatcgatatgatttctgataattttaagttcaatgaacatattcctattttagtccacca 40190507  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||  || ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||  ||||| ||| |||| || ||||||| |    
T  40190506 gatcccaaaactgctgaagatgagttggaatgttcaactcaaccatacttgacatgaaggaaataggagtgtagattgactcactaacttaagcatttat 40190407  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 312  Q
    || ||||| |||||||| ||||||||||| |||||| || ||||| ||  ||||||| ||||| ||||||||| | || |||||||| ||| ||||||||    
T  40190406 acggatcactttaatttactagtgttggaatctcctcctagtgagatccgaagaatcctttttaatgatttatccgagacttgcatgtctaagaatgttc 40190307  T
Q  313 gattaacttcttaattttgtttt 335  Q
    ||||| ||| |||||||||||||    
T  40190306 gattagctttttaattttgtttt 40190284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 490 - 667
Target Start/End: Complemental strand, 33885930 - 33885750
Alignment:
Q  490 aatcatgacgtgagtcgtagggaagcaagtgagaaagttgttgaacatt--aaaaaccaatctcggcaaactaatttatcagcagccggggttgaattcc 587  Q
    ||||||||| |||||||||||||||||||    ||||||||||||  ||  | |||||||| ||||||| |||||||||||||||||||||||| || ||    
T  33885930 aatcatgacatgagtcgtagggaagcaagaacaaaagttgttgaaagttttataaaccaatttcggcaagctaatttatcagcagccggggttgtatccc 33885831  T
Q  588 acaaaatgttacaacttattaccaagagacaataataca-taacaatagaaaactaaaagctgtaattagtcctaaaccat 667  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33885830 acaaaatgttacaacttattaccaagagacaataatacagtaacaatagaaaactaaaagctgtaattagtcctaaaccat 33885750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 17290048 - 17290240
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  17290048 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 17290147  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||| |||  |||  |||| |||| ||| ||||||||| |||||||||||||||||  ||||| |||||||| |||||||| || ||||||    
T  17290148 aagctgctgagaatggattggcatgtgcaaatcaaccatatttggcgtgaaggaaatagaagtgccgattggcttgctaattttagtatttct 17290240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 7305027 - 7304957
Alignment:
Q  290 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  7305027 ggcttgcatgcctaagaatgttcgattagcttcttagttttgtttt-ttttgggctttgccctctcttgtac 7304957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 42865840 - 42865896
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  42865840 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 42865896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 26381339 - 26381237
Alignment:
Q  128 tgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatcattttaa 227  Q
    |||||||||| ||| |||| ||| |||||||||||| | ||||||||||||  |||  ||||||||| |||||  |||||||| |||  |||||||| ||    
T  26381339 tgaagatgagatggcatgtgcaaatcaaccatacttcgtgtgaaggaaataaaagttttgattggcttgctaacatcagcattactaaggatcatttgaa 26381240  T
Q  228 ttt 230  Q
    |||    
T  26381239 ttt 26381237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 11995919 - 11995863
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  11995919 ctcatcttatagtggatagtgactcaaagatcttggtcgacatgattactgaaaatt 11995863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 24126599 - 24126543
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  24126599 ctcatcttatagtggagagtgactcaaagatcttggtcgacatgattactgaaaatt 24126543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 6372668 - 6372711
Alignment:
Q  133 atgagttggaatgttcaactcaaccatacttggcgtgaaggaaa 176  Q
    ||||||||| | |||||| |||||||||||||||||||||||||    
T  6372668 atgagttggcaagttcaaatcaaccatacttggcgtgaaggaaa 6372711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 24126328 - 24126257
Alignment:
Q  290 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||||||||||||||||  | || |||| |||||| |||| ||||  ||||||||||||||||| ||||||    
T  24126328 ggcttgcatgcctaggaacttccgtttaatttcttagttttctttttctttgggctttgccctcttttgtac 24126257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 26381454 - 26381377
Alignment:
Q  18 ttctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatat 95  Q
    ||||||||| | |||||| || |  |||||||||||||| |||||||||||||| |||||  | ||||| ||||||||    
T  26381454 ttctcatctaaaagtggagagcggctcaaagattttgattgacatgatttctgacaattttcatttcaacgggaatat 26381377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 464
Target Start/End: Complemental strand, 33259809 - 33259776
Alignment:
Q  431 aaaaaatctctagattcttctaacataaaatcta 464  Q
    ||||||||||||||||||| ||||||||||||||    
T  33259809 aaaaaatctctagattcttttaacataaaatcta 33259776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 42865976 - 42866032
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  42865976 ccatacttggcgggaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 42866032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 1636010 - 1636356
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1636010 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccg 1636109  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
     |||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| | |||||||    
T  1636110 tatccggaagctgctgaagatgagttggaatgttcaactcacccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaatcatttct 1636209  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttc 312  Q
    |||||||||||||||||||| ||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||    
T  1636210 acagatcattttaattttcttgtgctggagtctcctccttttgagatcaaaagaatcatttttgatgatttatctgggacttgcatgcctagaaatgttc 1636309  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgt 359  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1636310 gattaactttttaattttgttttcttttgggctttgtcctctcttgt 1636356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 26616911 - 26616565
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |    
T  26616911 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgtt--agtttaccg 26616814  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||    
T  26616813 gatctggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtactgattggctcactaatttaagcatttct 26616714  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 312  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | | |||||||||||||| |||||||    
T  26616713 acagatcattttaattttctagtgttggagtctcctccttgtgatgtcaaaagaatcatttttgatgatttatccgaagcttgcatgcctagaaatgttc 26616614  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||| |||||||||||| |||| ||||||| |||||||||||||||||    
T  26616613 gattagcttcttaattttatttttttttgggttttgccctctcttgtac 26616565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 456547 - 456201
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| || || |    
T  456547 attactctcatcttatagtggaaagtgattcaaagagtttgattgatatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccg 456448  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||| | |||||||    
T  456447 gatccggaagctactgaagatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattggctcgctaatttaaacatttct 456348  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttc 312  Q
    ||  |||| ||| ||||| ||||| |||||| |||| ||  | ||||| |||||||| |||||||| |||||||  || |||||||||||| |||||||     
T  456347 acgtatcactttgattttttagtgctggagtttcctcctaataaggtccaaagaatcctttttgattatttatccgggacttgcatgcctatgaatgttt 456248  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||| ||| ||| ||| ||||  |||||||||||||| ||||||||||    
T  456247 gattatctttttagtttggttt--ttttgggctttgccttctcttgtac 456201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 44145724 - 44145915
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| |||||||| |  | |||  |    
T  44145724 tcatcttat-gtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagttcatcgtatcagg 44145822  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||||||||| || |||||||| |||||||||    
T  44145823 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcatttct 44145915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 38560798 - 38560608
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||||||||||||||  || ||||| ||||||||| ||||||||||||  ||||| || ||||||||||| ||| |||||||| |  | ||| ||    
T  38560798 tcatcttatagtggaaagtggctcgaagatattgatcgacgtgatttctgataggttcaaatttaatgggaatatccctattttagttcatcgtatcaag 38560699  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcattt 211  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||  ||||||||||  ||||| |||||||| |||||||| |||||||    
T  38560698 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcacgaaggaaatagaagtgccgattggcttgctaattttagcattt 38560608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 45093635 - 45093706
Alignment:
Q  290 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    |||||||||||||||||| || || |||| |||||| |||| ||||  ||||||||||||||||| ||||||    
T  45093635 ggcttgcatgcctaggaacgtccgtttaatttcttagttttctttttctttgggctttgccctcttttgtac 45093706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 33373121 - 33373177
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  33373121 ctcatcttatagtggagagtgactcaaagatcttggtcgacatgattactgaaaatt 33373177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 42000334 - 42000390
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||||||||| || |  ||||| |||||||| |||||||||||||||||    
T  42000334 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 42000390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 45093364 - 45093420
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  45093364 ctcatcttatagtggatagtgactcaaagatcttggtcgacatgattactgaaaatt 45093420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 33373393 - 33373461
Alignment:
Q  291 gcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgta 360  Q
    ||||||||||||||||| || || |||| |||||| ||||  |||| ||||||||||||||||| |||||    
T  33373393 gcttgcatgcctaggaacgtccgtttaatttcttagtttt-ctttcctttgggctttgccctcttttgta 33373461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 9469177 - 9469221
Alignment:
Q  291 gcttgcatgcctaggaatgttcgattaacttcttaattttgtttt 335  Q
    |||||||||||||| |||||||| |||| |||||||||| |||||    
T  9469177 gcttgcatgcctagaaatgttcgtttaatttcttaatttggtttt 9469221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 42000469 - 42000525
Alignment:
Q  290 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctt 346  Q
    ||||||||||| |||||||||||| |||| |||||| |||| ||||  |||||||||    
T  42000469 ggcttgcatgcataggaatgttcgtttaatttcttagttttctttttctttgggctt 42000525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 45093500 - 45093556
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||||||||| || |  ||||| |||||||| || ||||||||||||||    
T  45093500 ccatacttggcgtgaaggcaacagaagtgcagattggcttgcaaatttcagcatttc 45093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 8019931 - 8019584
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8019931 attactctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccg 8019832  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
     |||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||    
T  8019831 tatccggaatctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagtaattct 8019732  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttatctagg-cttgcatgcctaggaatgttc 312  Q
    |||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||  || |||||||||||| ||||||||    
T  8019731 acagatca-tttaattttcttgtgctggagtctcctccttgtgaggtcaaaagaatcctttttgatgatttatccgggacttgcatgcctaagaatgttc 8019633  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019632 gattaacttcttaattttgttttcttttgggctttgccctctcttgtac 8019584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 48618946 - 48619290
Alignment:
Q  14 attattctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactg 113  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48618946 attactcttatcttatagtggaaagtgattcaaagattttgattgacatgatttctgataatttcaagtttaatgggaatattcctgttttagtttactg 48619045  T
Q  114 gatccagaagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
     |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  48619046 tatccggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttct 48619145  T
Q  214 acagatcattttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttc 312  Q
    ||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||| |  ||||||||||| |||||||||||    
T  48619146 acaaatcattttaattttctagtgttggagtctcctccttctgagatcaaaagaatcctttttgatgatttatccggggcttgcatgcttaggaatgttc 48619245  T
Q  313 gattaacttcttaattttgttttcttttgggctttgccctctctt 357  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||    
T  48619246 gattagcttcttaattttgttttcttttgagctttgccctctctt 48619290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 23 - 357
Target Start/End: Complemental strand, 29213907 - 29213572
Alignment:
Q  23 atcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccagaa 122  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || || ||||||||||    
T  29213907 atcttgtagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatatttctgttttacttcaccggatccagaa 29213808  T
Q  123 gctgttgaagatgagttggaatgttcaactcaaccatacttggcgtg-aaggaaatatgagtgctgattggctcgctaatttcagcatttctacagatca 221  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||| |||||| ||||||||||| |||||||||||||||||    
T  29213807 gctattgaagatgagttggaatgttcaactcaaccatacttggcgtgaaagaaaaaaggagtgttgattgactcgctaatttaagcatttctacagatca 29213708  T
Q  222 ttttaattttctagtgttggagtctcctgcttgtgaggtcaaaagaatcatttttgatgatttat-ctaggcttgcatgcctaggaatgttcgattaact 320  Q
     ||||||||||| ||||||||||||||| || |||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||    
T  29213707 ctttaattttcttgtgttggagtctcctcctagtgaggtccaaagaatcttttttgatgatttatcctgggcttgcatgcctaggaatgttcgattagct 29213608  T
Q  321 tcttaattttgttttcttttgggctttgccctctctt 357  Q
    | ||| ||||||||| | ||| |||||||||||||||    
T  29213607 tgttagttttgtttt-tgttgagctttgccctctctt 29213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 24473467 - 24473659
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttactggatccag 120  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||||| ||| |||||||| |  | |||  |    
T  24473467 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttcatcgtatcagg 24473566  T
Q  121 aagctgttgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||| |||  |||  |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  24473567 aagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 24473659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 24468636 - 24468711
Alignment:
Q  138 ttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||| |||| ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  24468636 ttggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 24468711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 46045830 - 46045886
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||    
T  46045830 ctcatcttatagtggagagtgactcaaagattttggtcgacatgattactgaaaatt 46045886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 5350053 - 5350109
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||||||||| || |  ||||| |||||||| |||||||||||||||||    
T  5350053 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 5350109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 8035770 - 8035826
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||||||||| || |  ||||| |||||||| |||||||||||||||||    
T  8035770 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttc 8035826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 38110858 - 38110802
Alignment:
Q  20 ctcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  38110858 ctcatcttatagtggagagtgactcaaagatattggtcgacatgattactgaaaatt 38110802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 8035635 - 8035690
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatt 76  Q
    ||||||||||||||| ||||| |||||||| ||| ||||||||||| |||| ||||    
T  8035635 tcatcttatagtggagagtgactcaaagatcttggtcgacatgattactgaaaatt 8035690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 38110722 - 38110666
Alignment:
Q  156 ccatacttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttc 212  Q
    |||||||||||| ||||| || |  ||||| |||||||| |||||||||||||||||    
T  38110722 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 38110666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 1223142 - 1223055
Alignment:
Q  21 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtt 108  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||||||  | |||||||| ||||||||| | ||| ||||||||    
T  1223142 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagtt 1223055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 1222890 - 1222820
Alignment:
Q  290 ggcttgcatgcctaggaatgttcgattaacttcttaattttgttttcttttgggctttgccctctcttgtac 361  Q
    ||||||||||||||||||||| || |||| ||| || |||  |||||| |||||||||||||||| ||||||    
T  1222890 ggcttgcatgcctaggaatgtccggttaatttcgtagtttc-ttttctcttgggctttgccctctattgtac 1222820  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 1223019 - 1222968
Alignment:
Q  162 ttggcgtgaaggaaatatgagtgctgattggctcgctaatttcagcatttct 213  Q
    |||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  1223019 ttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 1222968  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 464
Target Start/End: Complemental strand, 4295728 - 4295695
Alignment:
Q  431 aaaaaatctctagattcttctaacataaaatcta 464  Q
    ||||||||||||||||||| ||||||||||||||    
T  4295728 aaaaaatctctagattcttttaacataaaatcta 4295695  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 355922 - 356010
Alignment:
Q  21 tcatcttatagtggaaagtgattca-aagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtt 108  Q
    |||||||||||| |||| ||| ||  ||||| ||||||||||| |||| | | ||||||||||| ||| ||||||| ||| ||||||||    
T  355922 tcatcttatagtagaaaatgactcttaagatattgatcgacattatttgtcacaatttcaagtttaataggaatatccctattttagtt 356010  T

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