View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14297_high_34 (Length: 272)
Name: NF14297_high_34
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 39726433 - 39726694
Alignment:
| Q |
1 |
ataacataaccaccagaataatccataacaccccattgaaacaagaaaccaccaccccacaaactaaaagcaccaatagtataagaaaaagttaaccaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726433 |
ataacataaccaccagaataatccataacaccccattgaaacaagaaaccaccaccccacaaactaaaagcaccaatagtataagaaaaagttaaccaaa |
39726532 |
T |
|
| Q |
101 |
gtggcacaaacatcatccaagccttaaaattcatcctagccaaaacagaaccagccaatataacaagtgaaatagcagcaaaaacacactgaaaccaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726533 |
gtggcacaaacatcatccaagccttaaaattcatcctagccaaaacagaaccagccaatataacaagtgaaatagcagcaaaaacacactgaaaccaaac |
39726632 |
T |
|
| Q |
201 |
catagtagccattggataaaatggttcaatctcagcagtctccaaactaccgtcatgatgat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726633 |
catagtagccattggataaaatggttcaatctcagcagtctccaaactaccgtcatgatgat |
39726694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 25670969 - 25671126
Alignment:
| Q |
1 |
ataacataaccaccagaataatccataacaccccattgaaacaagaaa-ccaccaccccacaaactaaaagcaccaatagtataagaaaaagttaaccaa |
99 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||| | |||||| ||||||||||| | |||||||||||||| ||||||||||||| | | |||| |
|
|
| T |
25670969 |
ataacataaccaccagaataatcaatcacaccccaatgata-aagaaatccaccaccccaaagactaaaagcaccaacagtataagaaaaaataagccaa |
25671067 |
T |
|
| Q |
100 |
agtggcacaaacatcatccaagccttaaaattcatcctagccaaaacagaaccagccaa |
158 |
Q |
| |
|
|| || ||||| ||||||||| |||| |||||| || | | ||||||||||||||| |
|
|
| T |
25671068 |
agaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccagccaa |
25671126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 5625180 - 5625302
Alignment:
| Q |
1 |
ataacataaccaccagaataatccataacaccccattgaaacaagaaaccaccaccccacaaactaaaagcaccaatagtataagaaaaagttaaccaaa |
100 |
Q |
| |
|
|||||||| |||||||| |||| || |||||||| ||| |||| || ||||||||||| | |||||||||||||| ||| ||||| ||| | | ||||| |
|
|
| T |
5625180 |
ataacatagccaccagagaaatcaatgacaccccaatgatacaaaaatccaccaccccatatactaaaagcaccaacagtgtaagagaaaatgagccaaa |
5625279 |
T |
|
| Q |
101 |
gtggcacaaacatcatccaagcc |
123 |
Q |
| |
|
| || ||||| |||||||||| |
|
|
| T |
5625280 |
gaggtacaaaagccatccaagcc |
5625302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University