View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14297_high_36 (Length: 265)
Name: NF14297_high_36
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 35184133 - 35183896
Alignment:
| Q |
11 |
cacagagtcgtttgacatcttccgatttgatccatttgggtcagggagatataggttcttccagtgattccaatagcatccaaagctatagatatgatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35184133 |
cacagagtcgtttgacatcttccgatttgatccatttgggtcagggagatataggttcttccagtgattccaatagcatccaaagctatagatatgatgt |
35184034 |
T |
|
| Q |
111 |
gtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgctttcaaggatgacaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35184033 |
gtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgctcatctaacaactaagggtattttcgctttcaaggatgacaaa |
35183934 |
T |
|
| Q |
211 |
agacttgaaaaaggagaatccctttcgccgcaacttct |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35183933 |
agacttgaaaaaggagaatccctttcgccgcaacttct |
35183896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 91 - 248
Target Start/End: Complemental strand, 35106104 - 35105947
Alignment:
| Q |
91 |
caaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattt |
190 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| | ||| | ||||| |||||||||||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
35106104 |
caaagctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtattt |
35106005 |
T |
|
| Q |
191 |
tcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttct |
248 |
Q |
| |
|
| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35106004 |
ttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttct |
35105947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 64 - 247
Target Start/End: Complemental strand, 35178082 - 35177899
Alignment:
| Q |
64 |
ggttcttccagtgattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatcttt |
163 |
Q |
| |
|
|||||||||| |||||||| | | | || ||||||| ||| || ||||||||||||||| | ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
35178082 |
ggttcttccattgattccagtggagtgcatagctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatcttt |
35177983 |
T |
|
| Q |
164 |
atgctcatctaacaactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttc |
247 |
Q |
| |
|
||||||||||||||| || |||||||| || ||||||||||| ||||| || || |||||||||| |||||||| |||||||| |
|
|
| T |
35177982 |
atgctcatctaacaagaaaaggtatttttgcgttcaaggatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttc |
35177899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 35169760 - 35169626
Alignment:
| Q |
95 |
gctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgc |
194 |
Q |
| |
|
|||||| ||| |||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
35169760 |
gctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc |
35169661 |
T |
|
| Q |
195 |
tttcaaggatgacaaaagacttgaaaaaggagaat |
229 |
Q |
| |
|
||||||||||| ||||| || || |||||||||| |
|
|
| T |
35169660 |
cttcaaggatgataaaaggctagagaaaggagaat |
35169626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 35055173 - 35055053
Alignment:
| Q |
109 |
gtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgctttcaaggatgaca |
208 |
Q |
| |
|
||||| |||||||| | ||| ||||||| ||||| | |||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||| |
|
|
| T |
35055173 |
gtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatgaca |
35055074 |
T |
|
| Q |
209 |
aaagacttgaaaaaggagaat |
229 |
Q |
| |
|
|||| ||||| |||||||||| |
|
|
| T |
35055073 |
aaagtcttgagaaaggagaat |
35055053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 500444 - 500356
Alignment:
| Q |
85 |
agcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatct |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
500444 |
agcatccaaagctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatct |
500356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 25636510 - 25636626
Alignment:
| Q |
94 |
agctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcg |
193 |
Q |
| |
|
||||||| ||||||||| |||||||||||| | ||| |||||||||||||||| |||||||| ||||| ||||||||||| || | || ||||||| |
|
|
| T |
25636510 |
agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcga |
25636609 |
T |
|
| Q |
194 |
ctttcaaggatgacaaa |
210 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
25636610 |
ccttcaaggatgacaaa |
25636626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 25484251 - 25484384
Alignment:
| Q |
76 |
gattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaa |
175 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||| ||||||||| | ||| |||||||||| || | |||||||| ||||| || |||||||| | |
|
|
| T |
25484251 |
gattctaatagcaaccaaagctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctca |
25484350 |
T |
|
| Q |
176 |
caactaagggtattttcgctttcaaggatgacaa |
209 |
Q |
| |
|
| || ||||||||| | |||||||||||||| |
|
|
| T |
25484351 |
atagaaaaggtattttcaccttcaaggatgacaa |
25484384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 25442322 - 25442434
Alignment:
| Q |
98 |
atagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgcttt |
197 |
Q |
| |
|
||||||| |||||||| |||||||| | ||| ||||||||||||| | |||||||| ||||| || | |||||| || | || |||||||||| || |
|
|
| T |
25442322 |
atagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtctt |
25442421 |
T |
|
| Q |
198 |
caaggatgacaaa |
210 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25442422 |
caaggatgacaaa |
25442434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 25479049 - 25478939
Alignment:
| Q |
97 |
tatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaacaactaagggtattttcgctt |
196 |
Q |
| |
|
|||||||| || ||||||||||||||| | ||| ||||||||| || || |||| ||| ||||| ||||||||||| || | || ||||||||| | | |
|
|
| T |
25479049 |
tatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtattttcacgt |
25478950 |
T |
|
| Q |
197 |
tcaaggatgac |
207 |
Q |
| |
|
||| ||||||| |
|
|
| T |
25478949 |
tcatggatgac |
25478939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University