View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_high_5 (Length: 665)
Name: NF14297_high_5
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Complemental strand, 39215209 - 39214824
Alignment:
| Q |
15 |
cataggcatatgataaaatgaacactgcagaacatgtttgtggtagaaaatgagttctacatgacaagatgcattttggggaaattgattttgaacaaac |
114 |
Q |
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| T |
39215209 |
cataagcatatgataaaatgaacactgcagaacatgtttgtggtagaaaatgagttctacatgacaagatgcattttggggaaattgattttgaacaaac |
39215110 |
T |
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| Q |
115 |
ttcataggaagtgtttgctctagaattagcaaggcaaacttcaatataaagaaagtgttacatataggaagctnnnnnnntcttatgaattggaccacat |
214 |
Q |
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| T |
39215109 |
ttcataggaagtgtttgctctagaattagcaaggcaaacttcaatataaagaaagtgttacatataggaagctaaaataatcttatgaattggaccacat |
39215010 |
T |
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| Q |
215 |
tnnnnnnnttgagcatgccacaaaacagctctcaagcctttcaagtttcaaccgtcaaaccagaagtatggagaccaaatagatgctcccaaggctttta |
314 |
Q |
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| T |
39215009 |
taaaaaaattgagcatgccacaaaacagctctcaagcctttcaagtttcaaccgtcaaaccagaagtatggagaccaaatagatgctcccaaggctttta |
39214910 |
T |
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| Q |
315 |
gagtacaataagtgctagaaggaatgttttccaaaactggaccagagattgaacaagtgagactttcgggccatggttcaattagt |
400 |
Q |
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| T |
39214909 |
gagtacaataagtgctagaaggaatgttttccaaaactggaccagagattgaacaagtgagactttcgggccatggttcaattagt |
39214824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 472 - 649
Target Start/End: Complemental strand, 39214801 - 39214624
Alignment:
| Q |
472 |
gtagaagtactaaatgtattttaaaaactagaaataagtgaaagaacgtatatgttctatcatatgtagtttaatttggttcgatttgattcgtatagaa |
571 |
Q |
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| T |
39214801 |
gtagaagtactaaatgtattttaaaaactagaaataagtgaaagaacgtatatgttctatcatatgtagtttaatttggttcgatttgattcgtatagaa |
39214702 |
T |
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| Q |
572 |
agaaacaaaacggtggttatataccaactggctctccatttacgagtataaattgatattcctagtatctgatatcca |
649 |
Q |
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| T |
39214701 |
agaaacaaaacggtggttatataccaactggctctccatttacgagtataaattgatattcctagtatctgatatcca |
39214624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 452
Target Start/End: Complemental strand, 39214822 - 39214792
Alignment:
| Q |
422 |
gaatcagatgactatgaataagtagaagtac |
452 |
Q |
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| T |
39214822 |
gaatcagatgactatgaataagtagaagtac |
39214792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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