View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14297_high_6 (Length: 638)
Name: NF14297_high_6
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 239 - 622
Target Start/End: Complemental strand, 38900520 - 38900137
Alignment:
| Q |
239 |
ccttagattcaatctatttgaccttgtcactcatattataatctgttggtacccagattgaaacagaagtcaaaggtcttgacttccaacacagagccaa |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38900520 |
ccttagattcaatctatttgaccttgtcactcatattataatctgttggtacccagattgaaacagaagtcaaaggtcttgacttccaacacagagccaa |
38900421 |
T |
|
| Q |
339 |
cttacagttctcaaattgcacccaataccctttaccaaacaagctaaccaataacttagcctgtgaaatattacatgtactcattccaacacgtttatac |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38900420 |
cttacagttctcaaattgcacccaataccctttaccaaacaagctaaccaataacttagcctgtgaaatattacatgtactcattccaacacgtttatac |
38900321 |
T |
|
| Q |
439 |
cctttcaatgaatnnnnnnntctttcttcccacaatattctctcctctttttcacaaggaaactgtcttacactgtctaagattctattccccaaaacct |
538 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38900320 |
cctttcaatgaataaaaaaatcttccttcccacaatattctctcctctttttcacaaggaaactgtcttacactgtctaagattctattccccaaaacct |
38900221 |
T |
|
| Q |
539 |
ctttctctataagggctaactccatcttatggctacgcgacagagtactaacaagtgaatctgaaactgcaatatagtgatgca |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38900220 |
ctttctctataagggctaactccatcttatggctacgcgacagagtactaacaagtgaatctgaaactgcaatatagtgatgca |
38900137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 38900758 - 38900558
Alignment:
| Q |
1 |
gatacgtaaatagcatgcttaaaggaatattttgctgatattgagctataggaagaacatgcaacaataatatagagtctaaacttaaaaatctgttcaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38900758 |
gatacgtaaatagcatgcttgaaggaatattttgctgatattgagctataggaagaacatgcaataataatatagagtctaaacttaaaaatctgtacaa |
38900659 |
T |
|
| Q |
101 |
atatattgaaataccctataatcgcattacattcatcagaatgaataaagtaacctacaaccataatacaccacttccttatgaaatcatctcaataatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38900658 |
atatattgaaataccctataatcgcattacattcatcagaatgaataaagtaacctacaaccataatacaccacttccttatgaaatcatctcaataatt |
38900559 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
38900558 |
t |
38900558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 18893208 - 18893252
Alignment:
| Q |
6 |
gtaaatagcatgcttaaaggaatattttgctgatattgagctata |
50 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
18893208 |
gtaaataacatgcttaaaggaatatattgatgaaattgagctata |
18893252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University