View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_high_7 (Length: 621)
Name: NF14297_high_7
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 19 - 609
Target Start/End: Original strand, 4918182 - 4918773
Alignment:
| Q |
19 |
attaaagttcaatatggtgaatgacaatgcaaaataaataaatatgaaatgaaacttttattcttctatatgaaaaatgatacttcatgagcttatgcaa |
118 |
Q |
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| T |
4918182 |
attaaagttcaatatggtgaataacaatgcaaaataaataaatatgaaatgaaacttttattcttctatatgaaaaatgatacttcatgagcttatgcaa |
4918281 |
T |
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| Q |
119 |
tctttattactcgttttcattttcacaaccaatttttaaattggtttgagaaataaatttaggcatgtgttgtttccctttaattatttgagaaataact |
218 |
Q |
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| T |
4918282 |
tctttattactcgttttcattttcacaaccaatttttaaattggtttgagaaataaatttaggcatgtgttgtttccctttaattatttgagaaataact |
4918381 |
T |
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| Q |
219 |
tagagggtccacactannnnnnn-gcagatgggaacaggatacaacttgaccaaaaatgatcttgtaaaaagcgtacaggcggctgtattgagatcgatg |
317 |
Q |
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| T |
4918382 |
tagagggtccacactattttttttgcagatgggaacaggatacaacttgaccaaaaatgatcttgtaaaaagcgtacaggcggctgtattgagatcgatg |
4918481 |
T |
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| Q |
318 |
tcgtaatgtgaacatgtggtcccactgttcgatgatattataagagatatgtaggtcaaaatgttaatgtatttagttacggtgttatcttggtcgtatc |
417 |
Q |
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| T |
4918482 |
tcgtaatgtgaacatgtggtcccactggtcgatgatattataagagatatgtaggtcaaaatgttaatgtatttagttacggtgttatcttggtcgtatc |
4918581 |
T |
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| Q |
418 |
tcaaaatgcattagatgacatggtttacattttcttaagttgaccggtatctcgttagtgacttagagcgatatcataagagatatttaggtcaaaatgt |
517 |
Q |
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| T |
4918582 |
tcaaaatgcattagatgatatgttttacattttctaaagttgaccggtagctcgtcagtgacttagagcgatatcataagagatatttaggtcaaaatgt |
4918681 |
T |
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| Q |
518 |
taatgtatctggttctcggctgcttgaggattgaaattatgtgtgctgtgtctgtgtatttctgttctggtagcttgttttcggcctttgct |
609 |
Q |
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| T |
4918682 |
taatgtatctggttctcggctgcttgaggattggaattatatgcgctgtgtctgtgtatttctgttctggtagcttgttttcggcctttgct |
4918773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 4895068 - 4895151
Alignment:
| Q |
131 |
gttttcattttcacaaccaatttttaaattggtttgagaaataaatttaggcatgtgttgtttccctttaattatttgagaaat |
214 |
Q |
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| T |
4895068 |
gttttccttttcacaaccaaattttgaattgatttgagaaattaattaaggcatgtactatttcccttgaattatttgagaaat |
4895151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 4912655 - 4912730
Alignment:
| Q |
22 |
aaagttcaatatggtgaatgacaatgcaaaataaataaatatgaaatgaaacttttattcttctatatgaaaaatg |
97 |
Q |
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| T |
4912655 |
aaaggtcaatatggtaaatgacattttaaaataaataaatacaaaatgaaactttcattcttctatatgaaaaatg |
4912730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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