View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_high_9 (Length: 596)
Name: NF14297_high_9
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 9 - 578
Target Start/End: Original strand, 28063790 - 28064360
Alignment:
| Q |
9 |
agcagagaagaagcaattgaagaattgatagatgtggtaattttcatctaaaatcattaatttttcatctacaattgtttccatcaatcattttcacaaa |
108 |
Q |
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| T |
28063790 |
agcagagaagaagcaattgaagaattgatagatgtggtaattttcatctaaaatcattaatttttcatctacaattgtttccatcaatcattttcacaaa |
28063889 |
T |
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| Q |
109 |
attt-aacaccataacgccgtgacattttaatgagtgtatattgatttataagaatgtcgctcctgatgaattttcaaattaatgaagtttaagaaaaac |
207 |
Q |
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| T |
28063890 |
attttaacaccataatgccgtgacattttaatgagtgtatattgatttataagaatgtcgctcctgatgaattttcaaattaataaagtttaagaaaaac |
28063989 |
T |
|
| Q |
208 |
tagatttatttgtgattttccagatagaaacaacaataccaccagaaaattttacaccaaggatagtagacaggactgaagactatcttagggtggagta |
307 |
Q |
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| T |
28063990 |
tatatttatttgtgattttccagatagaaacaacaataccaccagaaaattttacaccaaggatagtagacaggactgaagactatcttagggtggagta |
28064089 |
T |
|
| Q |
308 |
ccaaagcccaatcttgggggtatgtgcgtaatttaattctctcataatgaaatttaccttattatttataaatttatgctatcaagtattttaagacttt |
407 |
Q |
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| T |
28064090 |
ccaaagcccaatcttgggggtatgtgcgtaatttaattctctcataatgaaatttaccttattatttataaatttatgctaacaagtattttaagacttt |
28064189 |
T |
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| Q |
408 |
tgttgggttataaagaaccaactttaacaannnnnnnagtattcaaacagtttgtggatgatgttgagttctggtttccacaagataaggactcaattgt |
507 |
Q |
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| T |
28064190 |
tgttgggttataaagaaccaactttaacaatttttttagtattcaaacagtttgtggatgatgttgagttctggtttccacaagataaggactcaattgt |
28064289 |
T |
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| Q |
508 |
tgagtatcgatcagcatcaagggttgggaattttgattttgatgtgaatagaagaaggatcaaggtacaat |
578 |
Q |
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| T |
28064290 |
tgagtatcgatcagcagcaagggttgggaattttgattttgatgtgaatagaagaagaatcaaggtacaat |
28064360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 452 - 574
Target Start/End: Complemental strand, 7968805 - 7968683
Alignment:
| Q |
452 |
aaacagtttgtggatgatgttgagttctggtttccacaagataaggactcaattgttgagtatcgatcagcatcaagggttgggaattttgattttgatg |
551 |
Q |
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||||||||||| || ||||||||||| ||||| |||| || ||||| |||||| || ||||||||||| || |||||| | || || ||||||||||||| |
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| T |
7968805 |
aaacagtttgtagacgatgttgagttttggttcccaccaggtaagggctcaatcgtggagtatcgatctgcgtcaaggttgggaaactttgattttgatg |
7968706 |
T |
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| Q |
552 |
tgaatagaagaaggatcaaggta |
574 |
Q |
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| T |
7968705 |
tgaatagaaaaagaataaaggta |
7968683 |
T |
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