View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_low_12 (Length: 554)
Name: NF14297_low_12
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 117 - 409
Target Start/End: Complemental strand, 35803320 - 35803014
Alignment:
| Q |
117 |
tcccaacaactactccactatcaaattatcaatagattattagtggaataaaaggaacagtaatgaaatgaaagtgcataccttgtgaagatggaaattg |
216 |
Q |
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| T |
35803320 |
tcccaacaactactccactatcaaattatcaatag--------tggaataaaaggaacagttatgaaatgaaagtgcataccttgtgaagatggaaattg |
35803229 |
T |
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| Q |
217 |
acaccatcaattgacacagtaatatcactcggcaacccagaatcactaaacctacca----------------------aaatcacataaaaatctattt |
294 |
Q |
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| T |
35803228 |
acaccatcaatagacacagtaatatcacttggcaacccagaatcactaaacctaccaaaaatccaaaaaaacaggaaaaaaatcacataaaaatctattt |
35803129 |
T |
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| Q |
295 |
taaaacaataaagttgcatgtatgacttggattccactnnnnnnntgtcattatcttacaaatccaacatcatgagaaaacaaatagaaactgatgatta |
394 |
Q |
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| T |
35803128 |
taaaacaataaagttgcatgtatgacttggattccactaaaaaaatgtcattatcttaaaaattcaacatcatgggaaaacaaatacaaactgatgatta |
35803029 |
T |
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| Q |
395 |
cagaaaatgcaactg |
409 |
Q |
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| T |
35803028 |
cagaaaatgcaactg |
35803014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 475 - 554
Target Start/End: Complemental strand, 35802948 - 35802869
Alignment:
| Q |
475 |
taccagtgatgaccttgaagatgaaacccagaaagcttcccaggtggagccattttgaagcaaaggaaataaataccctc |
554 |
Q |
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| T |
35802948 |
taccagtgatgaccttgaagatgaaacccagaaagcttcccaggtggagccattttgaagcaaaggaaataaataccctc |
35802869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 35803426 - 35803389
Alignment:
| Q |
12 |
ataggtcacaaagtaggagcacattaattgatttggat |
49 |
Q |
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| T |
35803426 |
ataggtcacaaagtaggagcacattaattgatttggat |
35803389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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