View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_low_13 (Length: 493)
Name: NF14297_low_13
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 20 - 462
Target Start/End: Original strand, 46896 - 47338
Alignment:
| Q |
20 |
aactcagacttctaagattgatttccaaaattgatttcattagataagctaagtggagatggtttagtgggattattttttgtggctatggcaaatgttc |
119 |
Q |
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| T |
46896 |
aactcagacttctaagattgatttccaaaatttatttcattagataagctaagtggagatggtttagtgggattattttttgtggctatggcaaatgttc |
46995 |
T |
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| Q |
120 |
ttctggtggcggtaatgatatctgccggtcacgtttccggtggccatttgaatcccgctgtgaccttcggcctccttgttggcggccacatcaccgtcgt |
219 |
Q |
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| T |
46996 |
ttctggtggcggtaatgatatctgccggtcacgtttccggtggccatttgaatcccgctgtgaccttcggcctccttgttggcggccacatcaccgtcgt |
47095 |
T |
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| Q |
220 |
ccgttctatcttatattggatcgatcaacatatagcatctgcaggagcttgctatcttcttcattacctcactggtggattagtaagtgtcattttttat |
319 |
Q |
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| T |
47096 |
ccgttctatcttatattggattgatcaacttatagcatctgcaggagcttgctatcttcttcattacctcactggtggattagtaagtgtcattttttat |
47195 |
T |
|
| Q |
320 |
atttattctatcaattttgacaagaatttaacaattgaaattgttttactatactttcatttattcaattgatacttacatttcttctattcaaacgtaa |
419 |
Q |
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| T |
47196 |
attcattctatcaattttgacaagaatttaacaattgaaattgttttactttactttcatttattcaattgatacttacatttcttctattcaaacgtaa |
47295 |
T |
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| Q |
420 |
ttgagatgtatatgtctatgtataaatcgttagtgaaaaaact |
462 |
Q |
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| T |
47296 |
ttgagatgtatatgtctatgtataaatcgttagtgaaaaaact |
47338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 47 - 306
Target Start/End: Original strand, 44848 - 45107
Alignment:
| Q |
47 |
aaattgatttcattagataagctaagtggagatggtttagtgggattattttttgtggctatggcaaatgttcttctggtggcggtaatgatatctgccg |
146 |
Q |
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||||| |||||| ||||||||||||||||||||| |||||||| || |||||||||||||| ||| ||| |||| ||||||| |||||||| ||||| | |
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| T |
44848 |
aaatttatttcaatagataagctaagtggagatgccttagtgggtttgttttttgtggctattgcacatgctcttgtggtggctgtaatgatctctgctg |
44947 |
T |
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| Q |
147 |
gtcacgtttccggtggccatttgaatcccgctgtgaccttcggcctccttgttggcggccacatcaccgtcgtccgttctatcttatattggatcgatca |
246 |
Q |
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||| ||||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||| |||| ||||| ||| |||||||||| || || |
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| T |
44948 |
ctcatatttccggtggccatttgaatcccgccgtgactttgggcctccttgtcggaggccacatcactatcgttcgttcgatcctatattggattgacca |
45047 |
T |
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| Q |
247 |
acatatagcatctgcaggagcttgctatcttcttcattacctcactggtggattagtaag |
306 |
Q |
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| T |
45048 |
attgatagcatctgcagctgcttgttatcttcttcattatctctctggtggattggtaag |
45107 |
T |
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