View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_low_17 (Length: 446)
Name: NF14297_low_17
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Complemental strand, 3723101 - 3722680
Alignment:
| Q |
11 |
aatgaaagggaaccatttgcttacttacttgtatggtcattattagtgtgaatggatagaagaatgaaaaggcataaaatccattaaatttttatttggt |
110 |
Q |
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| T |
3723101 |
aatgaaagggaaccatttgcttacttacttgtatggtcattattagtgtgaatggatagaagaatgaaaaggcataaaatccattaaatttttatttggt |
3723002 |
T |
|
| Q |
111 |
ataagtttattcgaccaccttctttagaaaattcataatagatgtcactattcaaccagtgaaagtttgtgtagattatgtggcatgggtttatcacaaa |
210 |
Q |
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| T |
3723001 |
ataagtttattcgaccaccttctttagaaaattcataatagatatcactattcaaccagtgaaagtttgtgtagattatgtggcatgggtttatcacaaa |
3722902 |
T |
|
| Q |
211 |
gcaaccaaaattgttgatcaatatgaacattcatcactaacaccctatgttgtttattttttaaatctcagcaacacttggatcgactctgtctatgcac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3722901 |
gcaaccaaaattgttgatcaatatgaacattcatcactaacacactatgttgtttattttttaaatctcagcaacacttggatcgactctgtctatgcac |
3722802 |
T |
|
| Q |
311 |
cgtctaaaacctcgtgtgtatgttgggtgcatgaagtctggtcctgtcctttctcagaagtaagaaaatatgaattgtannnnnnnnccagtatgtttaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3722801 |
cgtctaaaacctcgtgtgtatgttgggtgcatgaagtctggtcctgtcctttctcagaagtaagaaaatatgaattgtatcttttttccagtatgtttaa |
3722702 |
T |
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| Q |
411 |
tattatttcttagggtaactat |
432 |
Q |
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|||||||||||||||||||||| |
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| T |
3722701 |
tattatttcttagggtaactat |
3722680 |
T |
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