View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_low_21 (Length: 418)
Name: NF14297_low_21
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 48816156 - 48816555
Alignment:
| Q |
1 |
gtcagacaatttatacctctattcgtgagcctcgacctcgttagcaaacaatcatgacaaactctccaaatgaagttcttcactttgggagggactttat |
100 |
Q |
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| T |
48816156 |
gtcagacaatttatacctctattcgtgagcctcgacctcgttagcaaacaatcacgacaaactctccaaatgaaattcttcactttaggagggattttat |
48816255 |
T |
|
| Q |
101 |
gcttccaaacgttgttccatacaccgacttatgaagattgatgttgtatgcaatagtatccaaacaaagtttatatgcattccgcactgaatatttccca |
200 |
Q |
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| T |
48816256 |
gcttccaaacgttgttccatacaccaacttatgaagattgatgttgtatgcaatagtatccaaacaaaatttatatgcattccgcactgaatatttccca |
48816355 |
T |
|
| Q |
201 |
tatttctacgccttccaaattaatttatccttatgcgccaattgaattaaagaggtattaagtatgaggtttgttacctctagatcaaacatattatcgc |
300 |
Q |
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| T |
48816356 |
tatttctacgccttccaaattaatttatccttatgcgccaattgaattaaagaggtattaagtatgaggtttgttacctctagatcaaacatattatcgc |
48816455 |
T |
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| Q |
301 |
acaaaacaagttgttttgcacccaattatgcaacaccatcacataaccaaggagcatcgaaaataggaatggaagtaccgttccaattctccctctagaa |
400 |
Q |
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| T |
48816456 |
acaaaacaagttgttttgcacccaataatgcaacaccatcacataaccaaggagcatcgaaaataggaatggaagtaccgttccaattctccctctagaa |
48816555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 292
Target Start/End: Complemental strand, 21623169 - 21622882
Alignment:
| Q |
6 |
acaatttatacctctattcgtgagcctcgacctcgttagcaaacaatcatgacaaactctccaaatgaagttcttcactttgggagggactttatgcttc |
105 |
Q |
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||||||||||||||||| |||||||| | || ||| ||| ||||| | |||| |||||||||| |||||| |||||||| | |||||||| | ||||| |
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| T |
21623169 |
acaatttatacctctatatgtgagccttgcccatgttggcagacaattacgacatactctccaaacgaagttattcacttttgaagggacttcaagcttc |
21623070 |
T |
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| Q |
106 |
caaacgttgttccatacac-cgacttatgaagattgatgttgtatgcaatagtatccaaacaaagtttatatgcattccgcactgaatatttcccatatt |
204 |
Q |
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| T |
21623069 |
caaatttcgttccatccactcggcttatgaagatgggagttatctacaatagtattaacacaaagtctatatgaactccgcactaaatattgcccatctt |
21622970 |
T |
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| Q |
205 |
tctacgccttccaaattaatttatccttatgcgccaattgaattaaagaggtattaagtatgaggtt-tgttacctctagatcaaacat |
292 |
Q |
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| T |
21622969 |
tttccgccttccaaattaatttatccttatacaccgattgaattaaag-ggtaataagtatgaggttctcttacctctggatcaaacat |
21622882 |
T |
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