View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_low_24 (Length: 359)
Name: NF14297_low_24
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 35728842 - 35729183
Alignment:
| Q |
16 |
cttcattcgtataatattaaataaatgtgaggtctaggttgccttcgaagaattgcgttcatatgtgacaatttaagttttgacatgatttgacaattta |
115 |
Q |
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| T |
35728842 |
cttcattcgtataatattaaataaatgtgaggtctaggttgccttcgaagaattgcgttcaaatgtgacaatttaagttttgacatgatttgacaattta |
35728941 |
T |
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| Q |
116 |
ctagtaacaatgaatggtgctgtgctccagagttttgtatacatacatattcatgttttataaacaaaatgttattaaaaagataaataaaccatggttt |
215 |
Q |
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| T |
35728942 |
ctagtaacaatgaatggtgatgtgctccagagttttgtatacatacatattcatattttataaacaaaatgttatt-aaaagataaataaaccatggttt |
35729040 |
T |
|
| Q |
216 |
tgatgttactccaaaggacaatggaagcaataaaatgaaacttacttggatcaagttcagcactaacaagctccaaaaccaagtgtttgttaccaacaat |
315 |
Q |
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| T |
35729041 |
tgatgttactgcaaaggacaatggaagcaataaaatgaaacttacttggatcaagttcagcactaacaagctccaaaaccaagtgtttgttaccaacaat |
35729140 |
T |
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| Q |
316 |
accagtaacaatattctttatgagaccaccgtccctatgcttc |
358 |
Q |
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| T |
35729141 |
accagtaacaatattctttatgagaccaccatcactttgcttc |
35729183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 345
Target Start/End: Complemental strand, 35720196 - 35720104
Alignment:
| Q |
253 |
aaacttacttggatcaagttcagcactaacaagctccaaaaccaagtgtttgttaccaacaataccagtaacaatattctttatgagaccacc |
345 |
Q |
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| T |
35720196 |
aaacttacttggatcaagctcagcactgactaactccaaaattaaatgtttgttaccaacaataccagtgacaatattcttgatgaggccacc |
35720104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 72 - 358
Target Start/End: Complemental strand, 28051442 - 28051157
Alignment:
| Q |
72 |
gttcatatgtgacaatttaagttttgacatgatttgacaatttactagtaacaatgaatggtgctgtgctccagagttttgtatacatacatattcatgt |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28051442 |
gttcatatgtgacaatttaagttttgacatgatttgacaatttactagtaacaatgaatggtgttgtgctccagagttttgtatacatacatattcatgt |
28051343 |
T |
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| Q |
172 |
tttataaacaaaatgttattaaaaagataaataaaccatggttttgatgttactccaaaggacaatggaagcaataaaatgaaacttacttggatcaagt |
271 |
Q |
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| T |
28051342 |
tttataaacaaaatgttattaaaa-gataaataaaccatggttttgatgttactgcaaaggacaatggaagcaataaaattaaacttacttggatcaagt |
28051244 |
T |
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| Q |
272 |
tcagcactaacaagctccaaaaccaagtgtttgttaccaacaataccagtaacaatattctttatgagaccaccgtccctatgcttc |
358 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
28051243 |
tcagcactaaccagctccaaaactaagtgtttgttaccaacaataccagtaacaatattctttatgagaccaccatcactttgcttc |
28051157 |
T |
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