View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_low_27 (Length: 322)
Name: NF14297_low_27
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 27449841 - 27450119
Alignment:
| Q |
23 |
gtaggaaatttcttatctcttaatactagtttctcacgcgctctatgacattttaaaatatatattataaaagcgtaaaatacgaccaaaaaccctccat |
122 |
Q |
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| T |
27449841 |
gtagggaatttcttatcacctcatactagtttctcgtgcgctctataacatttcagattgtatattataaaagcgtaaaata--atcaaaaaccctccat |
27449938 |
T |
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| Q |
123 |
tttttggattttaaaatccgaaaattgagtgctgagaagtttggaggtctggaaaacgaactcactacaaggtaaagttctttagaaaaataaaggcttg |
222 |
Q |
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| T |
27449939 |
tttttggattttaaaatccaaaaatagaatgc-gagaagcttggagttctggaaaacgaattcactacaaggtaaagttctttagaaaaataaaggcttg |
27450037 |
T |
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| Q |
223 |
taagcacaaagcctaaaacaccaattcactacagaagccaagacccacgaatccccattagttagatgtctaatacaattct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27450038 |
taagcacaaagcctaaaacaccaattcactacagaagccaagacccacgaatccccattagttagatgtctaatacaattct |
27450119 |
T |
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