View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_low_28 (Length: 317)
Name: NF14297_low_28
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 41095150 - 41095441
Alignment:
| Q |
11 |
cacagatattttatggtgtctatttgagagttacaagcattgcattccatatgacaagatatctctatgtaggatttctaataaatgtagcacacagtag |
110 |
Q |
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| T |
41095150 |
cacagatattttatggtgtttatttgagagttacaagcattgcattccatatgacaagatatctctatgtaggatttctaataaatgtagcacacagtag |
41095249 |
T |
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| Q |
111 |
atctctggattagnnnnnnnagtaagatgtgtattttgtgttcagtggatgaatttgtaatagcagaatgactgactatggtcattattatgattatgat |
210 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41095250 |
atctctggattagtttttttagtaagatgtgtattttgtgttcagtagatgaatttgtaatagcagaatgactgactatggtcattattatgattatgat |
41095349 |
T |
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| Q |
211 |
gataattaattttctttcataacataacatcccaaacagaaaatttatccatnnnnnnncttcaagttaaatcatagttaactcatgctagt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41095350 |
gataattaattttctttcataacataacatcccaaacagaaaatttatccataaaaaaacttcaagttaaatcatagttaactcatgctagt |
41095441 |
T |
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