View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14297_low_32 (Length: 289)

Name: NF14297_low_32
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14297_low_32
NF14297_low_32
[»] chr7 (36 HSPs)
chr7 (15-273)||(44530595-44530849)
chr7 (10-123)||(43457488-43457601)
chr7 (10-122)||(10899052-10899164)
chr7 (45-122)||(35727731-35727808)
chr7 (10-122)||(44333171-44333281)
chr7 (45-122)||(48646081-48646158)
chr7 (10-122)||(7258307-7258419)
chr7 (45-122)||(48788686-48788763)
chr7 (10-122)||(13578300-13578411)
chr7 (10-117)||(12223678-12223785)
chr7 (12-123)||(48647424-48647535)
chr7 (45-123)||(48777287-48777365)
chr7 (10-123)||(7259663-7259776)
chr7 (45-149)||(30925022-30925129)
chr7 (47-106)||(46286551-46286610)
chr7 (45-123)||(44334463-44334541)
chr7 (45-118)||(8375597-8375670)
chr7 (10-123)||(35729065-35729178)
chr7 (10-122)||(8048763-8048875)
chr7 (10-122)||(12220055-12220166)
chr7 (10-114)||(44529068-44529172)
chr7 (45-122)||(8374946-8375023)
chr7 (46-149)||(45583686-45583792)
chr7 (47-122)||(42477413-42477487)
chr7 (10-101)||(45584475-45584566)
chr7 (10-96)||(32793229-32793315)
chr7 (11-93)||(43461708-43461789)
chr7 (46-103)||(33607638-33607695)
chr7 (55-119)||(10894385-10894449)
chr7 (10-122)||(19433913-19434025)
chr7 (10-121)||(5930112-5930222)
chr7 (13-122)||(34888905-34889014)
chr7 (45-122)||(39708135-39708212)
chr7 (12-98)||(25621702-25621788)
chr7 (10-119)||(24288845-24288954)
chr7 (54-103)||(34704960-34705009)
[»] chr2 (31 HSPs)
chr2 (10-123)||(17330209-17330322)
chr2 (10-123)||(2910131-2910244)
chr2 (10-118)||(7073675-7073783)
chr2 (45-119)||(31091541-31091615)
chr2 (45-122)||(32766253-32766330)
chr2 (10-122)||(17466807-17466919)
chr2 (47-157)||(32764932-32765045)
chr2 (45-123)||(31090195-31090273)
chr2 (12-122)||(40000315-40000425)
chr2 (45-122)||(24459460-24459537)
chr2 (10-94)||(21733750-21733834)
chr2 (45-112)||(14704048-14704115)
chr2 (45-123)||(24458091-24458169)
chr2 (10-100)||(34037652-34037742)
chr2 (44-122)||(39015037-39015115)
chr2 (10-103)||(31814323-31814416)
chr2 (43-123)||(2911503-2911583)
chr2 (45-123)||(39016397-39016473)
chr2 (12-123)||(33161798-33161909)
chr2 (45-122)||(7412124-7412201)
chr2 (45-102)||(17466093-17466150)
chr2 (45-102)||(38985003-38985060)
chr2 (51-102)||(5915012-5915063)
chr2 (44-101)||(21732163-21732217)
chr2 (45-122)||(15441985-15442062)
chr2 (45-102)||(34582684-34582741)
chr2 (45-104)||(12746215-12746274)
chr2 (20-103)||(38853806-38853889)
chr2 (17-103)||(5914355-5914441)
chr2 (45-103)||(26586309-26586367)
chr2 (43-117)||(43380617-43380691)
[»] chr8 (23 HSPs)
chr8 (10-123)||(35177426-35177539)
chr8 (10-118)||(32898424-32898532)
chr8 (10-153)||(1952949-1953094)
chr8 (10-106)||(5965421-5965517)
chr8 (45-121)||(35178818-35178894)
chr8 (46-122)||(41754810-41754886)
chr8 (10-113)||(5738002-5738105)
chr8 (10-123)||(10407563-10407676)
chr8 (45-98)||(45476218-45476271)
chr8 (55-119)||(41754033-41754097)
chr8 (10-117)||(5736879-5736986)
chr8 (47-122)||(30134598-30134673)
chr8 (51-113)||(1951984-1952045)
chr8 (10-115)||(28619028-28619133)
chr8 (45-106)||(28619559-28619620)
chr8 (49-103)||(41121160-41121214)
chr8 (10-91)||(10406269-10406350)
chr8 (44-122)||(33314893-33314971)
chr8 (45-106)||(12637772-12637833)
chr8 (45-122)||(24198966-24199043)
chr8 (82-122)||(28005375-28005415)
chr8 (82-122)||(28062678-28062718)
chr8 (10-102)||(28524810-28524902)
[»] chr3 (34 HSPs)
chr3 (30-122)||(11773050-11773142)
chr3 (12-119)||(2591662-2591769)
chr3 (10-123)||(36278983-36279096)
chr3 (45-155)||(17701933-17702046)
chr3 (45-115)||(48573024-48573094)
chr3 (11-121)||(52318297-52318407)
chr3 (45-122)||(17700550-17700627)
chr3 (45-123)||(2592021-2592099)
chr3 (45-115)||(36280331-36280401)
chr3 (45-122)||(45600953-45601029)
chr3 (45-155)||(55388069-55388182)
chr3 (45-106)||(48574473-48574534)
chr3 (47-122)||(34263837-34263912)
chr3 (17-117)||(49261523-49261620)
chr3 (10-123)||(52317010-52317123)
chr3 (45-118)||(53959114-53959187)
chr3 (10-122)||(20464101-20464213)
chr3 (10-122)||(50753849-50753961)
chr3 (45-123)||(48808397-48808475)
chr3 (10-103)||(3671089-3671182)
chr3 (45-122)||(33428449-33428526)
chr3 (45-106)||(47118065-47118126)
chr3 (45-122)||(55389483-55389560)
chr3 (45-117)||(19114570-19114642)
chr3 (10-122)||(36827454-36827566)
chr3 (59-122)||(53957707-53957769)
chr3 (45-154)||(47075365-47075477)
chr3 (45-122)||(19115161-19115237)
chr3 (33-102)||(40205934-40206003)
chr3 (79-119)||(19331143-19331183)
chr3 (55-122)||(47427892-47427959)
chr3 (45-115)||(33427791-33427860)
chr3 (45-74)||(48809668-48809697)
chr3 (126-158)||(27823722-27823754)
[»] chr5 (29 HSPs)
chr5 (44-123)||(8074482-8074561)
chr5 (10-123)||(4592892-4593005)
chr5 (45-123)||(546050-546128)
chr5 (45-122)||(28591128-28591205)
chr5 (17-122)||(16611760-16611865)
chr5 (45-122)||(19182982-19183059)
chr5 (10-122)||(25590463-25590574)
chr5 (10-116)||(19186199-19186305)
chr5 (45-123)||(2464700-2464778)
chr5 (44-117)||(544685-544758)
chr5 (45-122)||(9538063-9538140)
chr5 (47-123)||(32641742-32641818)
chr5 (12-123)||(40612640-40612751)
chr5 (45-122)||(2466788-2466865)
chr5 (45-122)||(8075847-8075924)
chr5 (10-122)||(9537055-9537166)
chr5 (10-102)||(16979044-16979136)
chr5 (10-122)||(21069321-21069433)
chr5 (49-108)||(4594118-4594176)
chr5 (45-122)||(14891161-14891234)
chr5 (44-91)||(14881010-14881057)
chr5 (45-96)||(18004696-18004747)
chr5 (60-118)||(18400226-18400284)
chr5 (45-118)||(32640324-32640397)
chr5 (48-104)||(13483070-13483126)
chr5 (49-93)||(13483174-13483218)
chr5 (45-93)||(31947051-31947099)
chr5 (84-119)||(13651173-13651208)
chr5 (10-114)||(28589739-28589843)
[»] scaffold0034 (1 HSPs)
scaffold0034 (45-123)||(116086-116164)
[»] chr4 (24 HSPs)
chr4 (17-122)||(53771035-53771140)
chr4 (10-149)||(42278051-42278193)
chr4 (45-123)||(47874595-47874673)
chr4 (45-122)||(47878498-47878575)
chr4 (10-122)||(4703196-4703308)
chr4 (45-102)||(26172956-26173013)
chr4 (47-122)||(54574457-54574532)
chr4 (48-122)||(31844754-31844828)
chr4 (17-115)||(53770372-53770470)
chr4 (10-94)||(19050298-19050382)
chr4 (10-122)||(39868954-39869064)
chr4 (17-117)||(48740006-48740106)
chr4 (10-106)||(50694797-50694893)
chr4 (48-102)||(54574822-54574876)
chr4 (12-122)||(4701797-4701907)
chr4 (45-106)||(21621871-21621932)
chr4 (45-103)||(26170691-26170749)
chr4 (42-102)||(2786273-2786333)
chr4 (10-122)||(39870653-39870765)
chr4 (53-103)||(19051253-19051303)
chr4 (45-106)||(21623131-21623192)
chr4 (10-67)||(24753540-24753597)
chr4 (45-122)||(26685436-26685508)
chr4 (67-104)||(44158554-44158591)
[»] chr1 (27 HSPs)
chr1 (45-122)||(7945568-7945645)
chr1 (10-123)||(10333165-10333278)
chr1 (10-123)||(32665749-32665862)
chr1 (17-122)||(5783095-5783200)
chr1 (45-121)||(52440573-52440649)
chr1 (45-115)||(9341039-9341109)
chr1 (10-123)||(9339677-9339790)
chr1 (45-103)||(6613993-6614051)
chr1 (12-122)||(10333018-10333128)
chr1 (45-122)||(5782446-5782523)
chr1 (45-122)||(7944187-7944264)
chr1 (45-102)||(22856732-22856789)
chr1 (13-103)||(50107185-50107275)
chr1 (10-103)||(6612470-6612563)
chr1 (10-123)||(52439510-52439619)
chr1 (44-106)||(25037926-25037988)
chr1 (44-106)||(25043138-25043200)
chr1 (46-103)||(3117700-3117757)
chr1 (11-94)||(34088449-34088532)
chr1 (12-117)||(8975196-8975301)
chr1 (47-122)||(534574-534648)
chr1 (52-103)||(44020037-44020088)
chr1 (10-73)||(22857558-22857621)
chr1 (10-102)||(32664564-32664647)
chr1 (45-102)||(1001206-1001263)
chr1 (45-122)||(11060798-11060875)
chr1 (45-122)||(44719382-44719459)
[»] chr6 (7 HSPs)
chr6 (45-155)||(30747995-30748108)
chr6 (47-122)||(31218987-31219062)
chr6 (45-122)||(31219174-31219251)
chr6 (10-118)||(23507984-23508092)
chr6 (9-75)||(24940477-24940543)
chr6 (61-121)||(6468811-6468871)
chr6 (10-80)||(31239966-31240036)
[»] scaffold0767 (1 HSPs)
scaffold0767 (11-103)||(5650-5742)
[»] scaffold0039 (3 HSPs)
scaffold0039 (10-122)||(79105-79217)
scaffold0039 (10-154)||(79662-79809)
scaffold0039 (49-118)||(74331-74400)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 44530595 - 44530849
Alignment:
Q  15 atcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtg 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||            
T  44530595 atcacttaacagaataacttaacgccaatgactaaagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcgggga-------- 44530686  T
Q  115 acagcgagccg---aatcaaggattaaaatgactatttactcataaagaaattgtttttagcatttgttaaaaaagaatttaagaaatacaacgtgaaag 211  Q
     || |||||||   ||||||  |||||| ||||||||| | |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  44530687 -caacgagccgcagaatcaaaaattaaagtgactatttgcgcataaagaaattatttttagcatttcttcaaaaagaatttaagaaatacaacgtgaaag 44530785  T
Q  212 caaaattgttttacatgattgctacacaaccacttt--tatataacacatggaaaacaaatgtg 273  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||    
T  44530786 caaaattgttttacatgattgctacataaccacttttatatataacacatggaaaacaaatgtg 44530849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 43457601 - 43457488
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||    
T  43457601 acatcatcacttaacagaataacttaacgtcatgaactaaagtgataacggaagtgcagagtcggggacttatttgtatttaatcctgagtcagggacct 43457502  T
Q  110 atgtgacagcgagc 123  Q
    ||| ||||||||||    
T  43457501 atgcgacagcgagc 43457488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 10899052 - 10899164
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  10899052 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatct 10899151  T
Q  110 atgtgacagcgag 122  Q
    |||||||||||||    
T  10899152 atgtgacagcgag 10899164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 35727808 - 35727731
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  35727808 actaaagtgataacggatgtgcagagtcagagacttatttatatttaatcctgagtcagggacctatgtgacagcgag 35727731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 44333281 - 44333171
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| |||  ||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  44333281 acatcatcacttaacagatttttttaacgtcaaggacta--gtgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacct 44333184  T
Q  110 atgtgacagcgag 122  Q
    |||||||||||||    
T  44333183 atgtgacagcgag 44333171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 48646158 - 48646081
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  48646158 actaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgag 48646081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 7258419 - 7258307
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  7258419 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagttagggacct 7258320  T
Q  110 atgtgacagcgag 122  Q
    |||||||| ||||    
T  7258319 atgtgacaacgag 7258307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 48788686 - 48788763
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||| |||||||||||||||    
T  48788686 actaaagtgataacggaagtgcagagtcagagacttatttatatttaattatgagtcagggacctatgtgacagcgag 48788763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 13578300 - 13578411
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||| ||| | |||||| ||  | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  13578300 acatcatcacttaacataattatttaacgtcagga-ctaaagtgataacggaagtgcagagtcagtgacttatttgtatttaattctgagtcagtgatct 13578398  T
Q  110 atgtgacagcgag 122  Q
     | ||||||||||    
T  13578399 ttatgacagcgag 13578411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 12223678 - 12223785
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||||| | |||||  || | |||||||| ||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||| ||    
T  12223678 acatcatcacttaacagaattatttaacatcagtgactaaagtaataacggaactgcagagtcagggacttctttatatttaatcctgagtcagggacct 12223777  T
Q  110 atgtgaca 117  Q
    ||||||||    
T  12223778 atgtgaca 12223785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 48647424 - 48647535
Alignment:
Q  12 atcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctat 111  Q
    |||||||||||||||| |   |||||| ||   ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  48647424 atcatcacttaacagatttttttaacgtcagggactaaagtgataacaaaagtgcagagtgagagacttatttgtatttaatcctgagtcagggacctat 48647523  T
Q  112 gtgacagcgagc 123  Q
    |||| |||||||    
T  48647524 gtgatagcgagc 48647535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 48777365 - 48777287
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||  |||||||||||||||    
T  48777365 actaaagtgataacggaagtgcagagtcagggaattatttgtatttaatcatgagtcagggacttatgtgacagcgagc 48777287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 7259663 - 7259776
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| || |     
T  7259663 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgaatcagagaccc 7259762  T
Q  110 atgtgacagcgagc 123  Q
    ||||||||||||||    
T  7259763 atgtgacagcgagc 7259776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 30925022 - 30925129
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga---gccgaatcaaggattaaaat 141  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| | ||   || |||||| |||||||| |    
T  30925022 actaaagtaataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaaggacctatgtgactgggagctgcagaatcagggattaaagt 30925121  T
Q  142 gactattt 149  Q
    ||||||||    
T  30925122 gactattt 30925129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 46286610 - 46286551
Alignment:
Q  47 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46286610 taaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 46286551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 44334463 - 44334541
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||||| |||||| |||||||||    
T  44334463 actaaagtgataatggaagtgcagagtcagggacttatttatatttaatcatgagtcagggacctatgtaacagcgagc 44334541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 8375597 - 8375670
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacag 118  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||    
T  8375597 actaaattgataacggaagtgcagagtcagaaacttctttgtatttaatcatgagtcagggacctatgtgacag 8375670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 35729065 - 35729178
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| | | |||| | ||   |||| ||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||| ||| ||    
T  35729065 acatcatcacttaacagatttatttaatgtcagggactacagtgatagcggaagtgcagagtcagtgacttatttgtatgtaatcctaagtcaaggacct 35729164  T
Q  110 atgtgacagcgagc 123  Q
    ||||||||||||||    
T  35729165 atgtgacagcgagc 35729178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 8048763 - 8048875
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||| ||||| | ||||||  ||  | |||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| || ||    
T  8048763 acatcatcacttaatagaattatttaacgttaaagattaaagtgataacggaagtgcagagtcggagacttctttgtatttaatcttgagtcagagacct 8048862  T
Q  110 atgtgacagcgag 122  Q
     |||| |||||||    
T  8048863 ttgtgtcagcgag 8048875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 12220166 - 12220055
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||| ||| | |||||| ||| | ||||||||||| | ||||||||||||||||||||| ||| ||||||||| ||||||||| ||||    
T  12220166 acatcatcacttaacaaaattatttaacgtcaaga-ctaaagtgatatcagaagtgcagagtcagagacttctttctatttaatcttgagtcaggaatct 12220068  T
Q  110 atgtgacagcgag 122  Q
     ||||||| ||||    
T  12220067 ttgtgacaacgag 12220055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 44529172 - 44529068
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||| ||||||| ||| | |||||| ||   |||||||||||||| ||||||  ||||| ||||||||||||||||||||| ||||||||||||||    
T  44529172 acatcatcgcttaacaaaattatttaacgtcagggactaaagtgataacagaagtgttgagtcggagacttatttgtatttaatcatgagtcagggatct 44529073  T
Q  110 atgtg 114  Q
    |||||    
T  44529072 atgtg 44529068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 8375023 - 8374946
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||||| | ||||| |||| |||||||||||| ||||||||| || |||||||||||||||    
T  8375023 actaaagtgataacggaagtgcaaaatcagaaacttttttgtatttaattctgagtcagagacctatgtgacagcgag 8374946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 45583792 - 45583686
Alignment:
Q  46 ctaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga---gccgaatcaaggattaaaatg 142  Q
    |||||||||||||||||||||||| ||||  |||||| |||||||||| |||||||||||| |||||||| |||||   || |||||| ||| |||| ||    
T  45583792 ctaaagtgataacggaagtgcagaatcaggaacttatctgtatttaattctgagtcagggacctatgtgatagcgaactgcagaatcagggactaaagtg 45583693  T
Q  143 actattt 149  Q
    |||||||    
T  45583692 actattt 45583686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 42477487 - 42477413
Alignment:
Q  47 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||| ||||    
T  42477487 taaaatgataacggaagtgcagagtcag-gacttatttgtatttaatcctgagtcagagacctatgcgacaacgag 42477413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 45584475 - 45584566
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtc 101  Q
    |||||||||||||||||| |   |||||| ||   |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  45584475 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcattggcttatttgtatttaatcctgagtc 45584566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 32793315 - 32793229
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcct 96  Q
    ||||||||| |||||| ||| | ||||||||||  |||||||||||||| ||| |||||| |||  |||||||||||||||||||||    
T  32793315 acatcatcagttaacataattatttaacgccaaagactaaagtgataaccgaaatgcagaatcaatgacttatttgtatttaatcct 32793229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 43461708 - 43461789
Alignment:
Q  11 catcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaat 93  Q
    ||||||||||||  |||||||||||||| ||   ||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  43461708 catcatcacttagtagaataacttaacgtcagagactaaagtgataacggaagtgcatagtca-aaacttatttgtatttaat 43461789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 33607638 - 33607695
Alignment:
Q  46 ctaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  33607638 ctaaaatgataacggaagtgcagaatcagagacttctttgtatttaatcctgaatcag 33607695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 10894449 - 10894385
Alignment:
Q  55 taacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagc 119  Q
    ||||||||||||||| | |||||||||||| ||||||||| ||||||||||| |||||| |||||    
T  10894449 taacggaagtgcagaattagagacttatttatatttaatcttgagtcagggacctatgtaacagc 10894385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 19433913 - 19434025
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||||| | |||||||||   |||||||||||||| ||||||| ||||| | |||||  || ||||||||||| | |||| || ||    
T  19433913 acatcatcacttaacagaattatttaacgccatagactaaagtgataactgaagtgcggagtcggtgacttccttatatttaatcctaaatcagagacct 19434012  T
Q  110 atgtgacagcgag 122  Q
     ||||||| ||||    
T  19434013 ttgtgacaacgag 19434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 5930112 - 5930222
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||||| | |||| | ||   ||||||||||||||||||||||| |||| || | ||  |||||||||||||||||| ||||| ||    
T  5930112 acatcatcacttaacagaattatttaatggcagggactaaagtgataacggaagtgcacagtc-gaaaatttcttgtatttaatcctgagttagggacct 5930210  T
Q  110 atgtgacagcga 121  Q
     ||||| |||||    
T  5930211 ttgtgatagcga 5930222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 34888905 - 34889014
Alignment:
Q  13 tcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatg 112  Q
    ||||||||||||| ||| | | |||| |||  ||||||||||||||||||||||||||| |  ||| | ||| ||||||||| ||||| || || || ||    
T  34888905 tcatcacttaacataattattaaacgtcaaggactaaagtgataacggaagtgcagagttaaggacatctttatatttaatcatgagtgagagacctttg 34889004  T
Q  113 tgacagcgag 122  Q
    ||||||||||    
T  34889005 tgacagcgag 34889014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 39708212 - 39708135
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||||| |||| | ||||| |||||||| |||| ||||||| ||| || |||||| |||||    
T  39708212 actaaagtgataacggaagtgcaaagtcggtgacttctttgtattcaatcttgagtcatggacctttgtgacggcgag 39708135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 25621702 - 25621788
Alignment:
Q  12 atcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctga 98  Q
    ||||||| |||||| ||| | |||||| || | |||||||||||||| |||||||| | ||| | ||| ||||||||||||||||||    
T  25621702 atcatcagttaacaaaattatttaacgtcagtgactaaagtgataacagaagtgcacattcaaaaactaatttgtatttaatcctga 25621788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 24288845 - 24288954
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    ||||||||| |||||||||| |  ||||||||   | ||||||||||| ||||||||| | |||  ||||  |||||| |||||||||||| || |||||    
T  24288845 acatcatcagttaacagaattatataacgccagagaataaagtgataatggaagtgcacattcaaggactactttgtaattaatcctgagttagagatct 24288944  T
Q  110 atgtgacagc 119  Q
     |||||||||    
T  24288945 ttgtgacagc 24288954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 34705009 - 34704960
Alignment:
Q  54 ataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||||| |||| || |||||||||||| ||||||||||||||||||||||    
T  34705009 ataacgaaagtacacagtcagagacttctttgtatttaatcctgagtcag 34704960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 17330209 - 17330322
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    ||||||||||||||||||||||||||||| ||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  17330209 acatcatcacttaacagaataacttaacgtcatggactaaagtgataacggaaatgcagagtcagagacttatttgtatttaatcctgagtcagggacct 17330308  T
Q  110 atgtgacagcgagc 123  Q
    ||||||||| ||||    
T  17330309 atgtgacagtgagc 17330322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 2910244 - 2910131
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2910244 acatcatcacttaacagatttttttaacgtcagggactaaagtgacaaaggaagtgcagagtcagagacttatttgtatttaatcccgagtcagggatct 2910145  T
Q  110 atgtgacagcgagc 123  Q
    ||||||||||||||    
T  2910144 atgtgacagcgagc 2910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 7073783 - 7073675
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| || ||    
T  7073783 acatcatcacttaacagaataacttaacgtcagggactaaagtgataacggaagtgcagaatcagagacttatttgtatttaatcccgaatcagagacct 7073684  T
Q  110 atgtgacag 118  Q
    ||| |||||    
T  7073683 atgcgacag 7073675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 31091541 - 31091615
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagc 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  31091541 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagc 31091615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 32766253 - 32766330
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  32766253 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgag 32766330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 17466807 - 17466919
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||||| | |||||| |    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |   |    
T  17466807 acatcatcacttaacagaattatttaacgtcttagactaaagtgataacggaagtgcagagtcagagacttctttgtatttaatcctgagtcagcggctt 17466906  T
Q  110 atgtgacagcgag 122  Q
    |||||||||||||    
T  17466907 atgtgacagcgag 17466919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 32765045 - 32764932
Alignment:
Q  47 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga---gccgaatcaaggattaaaatga 143  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| ||||| | |   || |||||| ||| |||| |||    
T  32765045 taaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagagacctatatgacaactagctgcagaatcagggactaaagtga 32764946  T
Q  144 ctatttactcataa 157  Q
    ||||||||||||||    
T  32764945 ctatttactcataa 32764932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 31090273 - 31090195
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  31090273 actaaaatcataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaaggacctatgtgacagcgagc 31090195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 40000315 - 40000425
Alignment:
Q  12 atcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctat 111  Q
    |||||||||||||||| |  ||||||| ||   | |||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||    
T  40000315 atcatcacttaacagattttcttaacgtcagggaataaagtgataacggaagtgcagggttagagacttatttgtatttaatcctcaatcagggatctat 40000414  T
Q  112 gtgacagcgag 122  Q
    || ||||||||    
T  40000415 gtaacagcgag 40000425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 24459460 - 24459537
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  24459460 actaaagtgataatagaagtgcagggtcagagacttatttgtatttaatcctgattcagggacctatgtgacagcgag 24459537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 21733750 - 21733834
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatc 94  Q
    ||||||||||||||||||||   |||||  ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21733750 acatcatcacttaacagaattttttaactgcaacaactaaagtgatgacggaagtgcagagtcagagacttatttgtatttaatc 21733834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 14704115 - 14704048
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatg 112  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||    
T  14704115 actaaagtgataacggaagtgcagagtgagggacttatttgtatttaatcctgagtcagggacctatg 14704048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 24458169 - 24458091
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||||  ||||||||||| |||||||| |||||||    
T  24458169 actaaagtgataacgaaagtgtagagtcagaaacttatttgtatttaattttgagtcagggacctatgtgatagcgagc 24458091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 34037652 - 34037742
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagt 100  Q
    |||||||||||||||| |||   |||||| |   ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  34037652 acatcatcacttaacataattttttaacggcgggaactaaagtgataacagaagtgcagagtcatagacttatttgtatttaatcctgagt 34037742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 39015115 - 39015037
Alignment:
Q  44 aactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  39015115 aactaaaatgataatgaaagtgcagagtcaaagacgtatttgtatttaatcctgagtcaaggatctatgtggcagcgag 39015037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 31814323 - 31814416
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||||||||||||||||||| | |||| || |   ||||||||||||||||||||||||||||| | |||| ||| |||||||| |||||||||    
T  31814323 acatcatcacttaacagaattatttaatgctagggactaaagtgataacggaagtgcagagtcaaaaacttctttatatttaattctgagtcag 31814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 2911503 - 2911583
Alignment:
Q  43 taactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||   ||||||| ||   |||||||||||||||    
T  2911503 taactaaagtgataacggaagtgcaaagtcagagacttatttatatttaactttgagtcatggccttatgtgacagcgagc 2911583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 39016397 - 39016473
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtc--agggatctatgtgacagcgagc 123  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||||  || ||| |||||||||||||||    
T  39016397 actaaagtgataacggaagtgcagagt----gacttatttgtatttaatcctgagtcagagagatgtatgtgacagcgagc 39016473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 33161909 - 33161798
Alignment:
Q  12 atcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctat 111  Q
    |||||||||||||| ||| | |||||| |||  |||||||||||||||||||| || |||| ||||||| |||| |||||||||| || ||| || || |    
T  33161909 atcatcacttaacaaaattatttaacgtcaaggactaaagtgataacggaagtacatagtctgagacttctttgcatttaatcctaaggcagagaccttt 33161810  T
Q  112 gtgacagcgagc 123  Q
    |||||| |||||    
T  33161809 gtgacaacgagc 33161798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 7412201 - 7412124
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||||||||||||||   |||| ||||| ||| ||||||||| |||||||| ||||||||||||| ||||    
T  7412201 actaaagtgataacggaagtgcactatcagtgacttctttatatttaatcttgagtcagagatctatgtgacaacgag 7412124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 17466150 - 17466093
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    |||||||||| ||||||||||||||||||||||  | |||||||||||||||||||||    
T  17466150 actaaagtgaaaacggaagtgcagagtcagagatatctttgtatttaatcctgagtca 17466093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 38985003 - 38985060
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||| | ||||||    
T  38985003 actaaagtgataacggaagtgcagagtcaaggacttctttgtatttaattccgagtca 38985060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 5915012 - 5915063
Alignment:
Q  51 gtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    ||||||||||||||||||||| || ||||| |||||||||||| ||||||||    
T  5915012 gtgataacggaagtgcagagttagtgacttctttgtatttaattctgagtca 5915063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 21732217 - 21732163
Alignment:
Q  44 aactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtc 101  Q
    ||||||||| ||||||||||| ||||||||   |||||||||||||||||||||||||    
T  21732217 aactaaagtaataacggaagtacagagtca---acttatttgtatttaatcctgagtc 21732163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 15441985 - 15442062
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||||   ||||||| | |||  ||||  ||||||||||||||||||||||| |||| ||||||||||||    
T  15441985 actaaagtgataataaaagtgcacattcaaggactactttgtatttaatcctgagtcaggaatctttgtgacagcgag 15442062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 34582684 - 34582741
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    ||||||||||||||||||||||| | |||| ||||  |||||||||||||| ||||||    
T  34582684 actaaagtgataacggaagtgcacattcagggactactttgtatttaatcccgagtca 34582741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 12746215 - 12746274
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagg 104  Q
    ||||||||||||||||||| ||| | ||||  |||  |||||||||||||||||||||||    
T  12746215 actaaagtgataacggaagggcacattcaggaactactttgtatttaatcctgagtcagg 12746274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 38853889 - 38853806
Alignment:
Q  20 ttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||||| ||| | |||||| || | |||||| |||||||||||||||| | | || ||||  ||||||||||||||||||||||    
T  38853889 ttaacataattatttaacgtcagtgactaaattgataacggaagtgcacatttagggactactttgtatttaatcctgagtcag 38853806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 5914441 - 5914355
Alignment:
Q  17 cacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    ||||||||||||| | |||||| ||    ||||||||||||||| |||||| |||||  ||||| ||||||||||||  ||||||||    
T  5914441 cacttaacagaattatttaacgtcatggtctaaagtgataacgggagtgcaaagtcactgacttctttgtatttaattgtgagtcag 5914355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 26586309 - 26586367
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    ||||||||||||||||||||||| | ||| |||||  ||| ||||||||| ||||||||    
T  26586309 actaaagtgataacggaagtgcacattcaaagactactttatatttaatcttgagtcag 26586367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 43380691 - 43380617
Alignment:
Q  43 taactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgaca 117  Q
    ||||||||||||||||  ||  ||| |||||||||||| | ||||||||||| |||||||| || || |||||||    
T  43380691 taactaaagtgataacataaacgcacagtcagagacttctatgtatttaatcatgagtcagagacctttgtgaca 43380617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 35177539 - 35177426
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| ||  |||||| ||   |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||    
T  35177539 acatcatcacttaacagattattttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatccggagtcagggacct 35177440  T
Q  110 atgtgacagcgagc 123  Q
    ||||||||||||||    
T  35177439 atgtgacagcgagc 35177426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 32898424 - 32898532
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||    
T  32898424 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtcagggacct 32898523  T
Q  110 atgtgacag 118  Q
    |||||||||    
T  32898524 atgtgacag 32898532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 1952949 - 1953094
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| | | |||||| ||   |||||||||||||||||||| |||||||| |||||||||||||| ||||||| |||||| |||||    
T  1952949 acatcatcacttaacagatttatttaacgtcagagactaaagtgataacggaagtacagagtcatagacttatttgtatgtaatcct-agtcagagatct 1953047  T
Q  110 atgtgacagcga---gccgaatcaaggattaaaatgactatttactc 153  Q
    || ||||| |||   || |||||| ||| |||| |||||||||||||    
T  1953048 atatgacaacgagctgcagaatcagggactaaagtgactatttactc 1953094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 5965421 - 5965517
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    ||||||| |||||||| ||| | |||||| ||   ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  5965421 acatcattacttaacataatcatttaacgtcagagactaaagtgataacggaagtgcagagtcaaagacttctttgtatttaatcctgagtcaggga 5965517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 35178818 - 35178894
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga 121  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | || |||||||||    
T  35178818 actaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaatatgacagcga 35178894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 41754810 - 41754886
Alignment:
Q  46 ctaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||| |||||||||||| ||||||||  |||| |||||||||||||||||||||| ||||||||||||||||||    
T  41754810 ctaaagtaataacggaagtgtagagtcaggaacttgtttgtatttaatcctgagtcagagatctatgtgacagcgag 41754886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 5738002 - 5738105
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||||| | ||||||||||  ||| |||||||||||||||| ||||||||   |||| ||||||||||||| ||||||| ||| ||    
T  5738002 acatcatcacttaacagaattatttaacgccaaagactgaagtgataacggaagtacagagtcaataacttctttgtatttaatcttgagtcatggacct 5738101  T
Q  110 atgt 113  Q
    ||||    
T  5738102 atgt 5738105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 10407563 - 10407676
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||  |||||||||||||||||||||||| ||| |  ||||||||||| ||||||||| |||||  || ||    
T  10407563 acatcatcacttaacagatttttttaacgtcaggaactaaagtgataacggaagtgcaaagttatggacttatttgtgtttaatcctaagtcaatgacct 10407662  T
Q  110 atgtgacagcgagc 123  Q
    ||||||||| ||||    
T  10407663 atgtgacagtgagc 10407676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 45476271 - 45476218
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctga 98  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  45476271 actaaagtgataacagaagtgcagagtcagagacttatttgtatttaattctga 45476218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 41754097 - 41754033
Alignment:
Q  55 taacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagc 119  Q
    ||||| ||||| |||||||| ||||| ||| ||||||||||||||||||||| ||||||||||||    
T  41754097 taacgaaagtgtagagtcagggacttgtttatatttaatcctgagtcagggacctatgtgacagc 41754033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 5736986 - 5736879
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||| ||| | ||||||  |   ||||||||||||||| ||||| ||||| ||||| || |||||||||||| |||| |||| ||| |    
T  5736986 acatcatcacttaacaaaattatttaacgtgagggactaaagtgataacgaaagtgtagagttagagatttctttgtatttaattctgaatcagagattt 5736887  T
Q  110 atgtgaca 117  Q
    ||||||||    
T  5736886 atgtgaca 5736879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 30134673 - 30134598
Alignment:
Q  47 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||| |||||||||||||| | |||| ||||||||||||| |||||  |||| || ||||||||||||    
T  30134673 taaagtgataacagaagtgcagagtcacacacttctttgtatttaatcatgagtaggggacctttgtgacagcgag 30134598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 1952045 - 1951984
Alignment:
Q  51 gtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgt 113  Q
    ||||||| | || |||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1952045 gtgataatgaaaatgcagagtcagaaacttatttgtatttaatcctgagtca-ggatctatgt 1951984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 28619133 - 28619028
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||| ||| | |||||| |    ||||||||||||||| |||||||||||||  || || ||||||||||||| || |||||||| ||    
T  28619133 acatcatcacttaacaaaattatttaacggccgagactaaagtgataacgaaagtgcagagtcaatgatttctttgtatttaatcatgggtcagggacct 28619034  T
Q  110 atgtga 115  Q
     |||||    
T  28619033 ttgtga 28619028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 28619559 - 28619620
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    |||||||||||||  ||||||||||||||  ||| | |||||||||||||||||||||||||    
T  28619559 actaaagtgataatagaagtgcagagtcaatgacctctttgtatttaatcctgagtcaggga 28619620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 41121214 - 41121160
Alignment:
Q  49 aagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||||||||  |||||||| |||||||||||| ||||||||||||| ||||||||    
T  41121214 aagtgataatagaagtgcatagtcagagacttctttgtatttaatcatgagtcag 41121160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 10406350 - 10406269
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtattta 91  Q
    |||||||||||||||||| |   ||||| |||   |||||||||||||  ||||||||||||||||||||| ||| ||||||    
T  10406350 acatcatcacttaacagatttttttaacaccagggactaaagtgataatagaagtgcagagtcagagacttgtttttattta 10406269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 33314971 - 33314893
Alignment:
Q  44 aactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||| |||||  ||| ||   ||||||||||||||||||| |||||||| || || || |||||||||    
T  33314971 aactaaagtgataaccgaagtatagaatcgatgacttatttgtatttaatcttgagtcagagacctttgagacagcgag 33314893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 12637772 - 12637833
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    ||||||||||||||||||||||| | ||||  |||  |||||||| |||||||||| |||||    
T  12637772 actaaagtgataacggaagtgcacattcaggaactactttgtattcaatcctgagttaggga 12637833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 24199043 - 24198966
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||||| | |||  || |  ||||||||||||||||| |||  || || ||||||||||||    
T  24199043 actaaagtgataacggaagtgcacattcaatgattactttgtatttaatcctgaatcaaagacctttgtgacagcgag 24198966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 28005415 - 28005375
Alignment:
Q  82 tttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||| |||||||||||||||||| ||||||| ||||    
T  28005415 tttgtatttgatcctgagtcagggatctttgtgacaacgag 28005375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 28062718 - 28062678
Alignment:
Q  82 tttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||| |||||||||||||||||| ||||||| ||||    
T  28062718 tttgtatttgatcctgagtcagggatctttgtgacaacgag 28062678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 28524902 - 28524810
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    ||||||||| |||||| ||| | |||||| ||   |||||| |||||||||||||||| | |||  || |  |||||||||||||||||||||    
T  28524902 acatcatcagttaacaaaattatttaacgtcagagactaaaatgataacggaagtgcacattcaaggattactttgtatttaatcctgagtca 28524810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 11773050 - 11773142
Alignment:
Q  30 aacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11773050 aacttaacgccagggactaaagtgataacggaagtgtagagtcagagacttatttgtatttaatcctgagtcagggacctatgtgacagcgag 11773142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 2591769 - 2591662
Alignment:
Q  12 atcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctat 111  Q
    ||||||||||||||||||||||||||  ||   ||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  2591769 atcatcacttaacagaataacttaacatcagggactaaagtgatcatggaagtgcagagtcagagacttgtttgtatttaatcctgagtcagggacctat 2591670  T
Q  112 gtgacagc 119  Q
    ||||||||    
T  2591669 gtgacagc 2591662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 36279096 - 36278983
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||| |||||   |||||| ||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  36279096 acatcatcacttaaaagaattttttaacgtcagggactaaaatgataacggaagtgcagagtcagagacttatttgtatttaatcctgaatcagggacct 36278997  T
Q  110 atgtgacagcgagc 123  Q
    |||||||| |||||    
T  36278996 atgtgacaacgagc 36278983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 17701933 - 17702046
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga---gccgaatcaaggattaaaat 141  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||   || ||||||  || |||| |    
T  17701933 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgcagaatcagagactaaagt 17702032  T
Q  142 gactatttactcat 155  Q
    ||||||||||||||    
T  17702033 gactatttactcat 17702046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 48573094 - 48573024
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtga 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  48573094 actaaagtgataacggaagtgcagagtcagaggcttatttgtatttaatcctgagtcagggacctatgtga 48573024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 52318297 - 52318407
Alignment:
Q  11 catcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatcta 110  Q
    ||||||||||||||||| |   |||||| ||   |||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52318297 catcatcacttaacagatttttttaacgtcagggactaaagtaatatcagaagtgcagagtcagggacttatttgtatttaatcctgagtcagggatcta 52318396  T
Q  111 tgtgacagcga 121  Q
    |||||||||||    
T  52318397 tgtgacagcga 52318407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 17700627 - 17700550
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||    
T  17700627 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacctatgtgacaacgag 17700550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 2592021 - 2592099
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    ||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2592021 actaaagtgataacggaagtattgagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagc 2592099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 36280331 - 36280401
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtga 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||    
T  36280331 actaaagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcagagacctatgtga 36280401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 45600953 - 45601029
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  45600953 actaaagtgataacggaagtgcagagtcag-gacttctttgtatttaatcctgaatcagggacctatgtgacagcgag 45601029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 55388182 - 55388069
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga---gccgaatcaaggattaaaat 141  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| || |||| |||||||||   || |||||| ||| |||| |    
T  55388182 actaaagtgataacgggagtgcagagtcagtaacttatttgtatttaatcctgagtcagagacctatatgacagcgagctgcagaatcagggactaaagt 55388083  T
Q  142 gactatttactcat 155  Q
    |||||||| |||||    
T  55388082 gactatttgctcat 55388069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 48574473 - 48574534
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  48574473 actaaagtgataacgaaagtgcagagtcagggacttatttgtatttaatcctgagtcaggga 48574534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 34263912 - 34263837
Alignment:
Q  47 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||    
T  34263912 taaagtgataatggaagtgtagagtcagagacttatttgtatttaatcctgaatcaaggacctctgtgacagcgag 34263837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 49261523 - 49261620
Alignment:
Q  17 cacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgac 116  Q
    ||||||| ||||||| |||||| ||   |||||||||||||||||| |||||||| ||||||   ||||||||||||||||||||||||| |||||||||    
T  49261523 cacttaatagaataaattaacgtcagagactaaagtgataacggaaatgcagagttagagac---tttgtatttaatcctgagtcagggacctatgtgac 49261619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 52317123 - 52317010
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   |||||| |||||||||| ||||||||| | |||||||||||||||||||| |||||||| || ||    
T  52317123 acatcatcacttaacagatttttttaacgtcatggactaaaatgataacggaggtgcagagttaaagacttatttgtatttaatcatgagtcagagacct 52317024  T
Q  110 atgtgacagcgagc 123  Q
    || |||||||||||    
T  52317023 atatgacagcgagc 52317010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 53959114 - 53959187
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacag 118  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||| |||||||| || |||||||||||    
T  53959114 actaaagtgataacggaagtgcagagtcatgaacttatttgtatttaatcatgagtcagagacctatgtgacag 53959187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 20464213 - 20464101
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| | | |||||| |    |||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||| |||||| ||    
T  20464213 acatcatcacttaacagagttatttaacgtcgtggactaaagtgataacagaagtgcagagtcagggacttctttgtatttaatcatgagccagggacct 20464114  T
Q  110 atgtgacagcgag 122  Q
     ||||||| ||||    
T  20464113 ttgtgacaacgag 20464101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 50753961 - 50753849
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   |||||||||||||| |||||| ||||||||| |||| ||| ||||||||||||| | ||||| ||    
T  50753961 acatcatcacttaacagatttttttaacggcagggactaaagtgataacagaagtgtagagtcagaaacttgtttatatttaatcctgaattagggacct 50753862  T
Q  110 atgtgacagcgag 122  Q
    |||||||||||||    
T  50753861 atgtgacagcgag 50753849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 48808475 - 48808397
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    |||||||||| |||||||||||||||| ||  ||||||||||||||||||||||||||| || |||| | |||||||||    
T  48808475 actaaagtgacaacggaagtgcagagttaggaacttatttgtatttaatcctgagtcagagacctatctaacagcgagc 48808397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 3671182 - 3671089
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||||||||||||||| |||   |||||| ||   | ||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  3671182 acatcatcacttaacataattttttaacggcagggattaaagtgataacggaagtggagagtcatagacttatttgtatttaattctgagtcag 3671089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 33428449 - 33428526
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||| ||||||| ||||||||||  ||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  33428449 actaaagtgacaacggaaatgcagagtcaaggacttctttgtatttaattctgagtcagggacctatgtgacaacgag 33428526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 47118065 - 47118126
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    ||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||    
T  47118065 actaaagtgataacgaaagtgcagagtcagagacttctttgcatttaatcctgagtcgggga 47118126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 55389483 - 55389560
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||||||  |||||||  || |||||||||||||||    
T  55389483 actaaagtgataacggaagtgtagagtcagggacttaattgtatttaattttgagtcaatgacctatgtgacagcgag 55389560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 19114642 - 19114570
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgaca 117  Q
    ||||||||||||||||||||||| ||| || ||||| ||||||||||||| ||||||||||| || |||||||    
T  19114642 actaaagtgataacggaagtgcaaagttagtgacttctttgtatttaatcttgagtcagggacctctgtgaca 19114570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 36827454 - 36827566
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||| ||| | |||||  ||   ||||||||||||||||||||| | | ||||||| |  ||| ||||||||||||||||| ||||||    
T  36827454 acatcatcacttaacaaaattatttaacatcagagactaaagtgataacggaagtgtacattcagagattattttatatttaatcctgagtcaaggatct 36827553  T
Q  110 atgtgacagcgag 122  Q
     ||| ||||||||    
T  36827554 ttgtcacagcgag 36827566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 53957769 - 53957707
Alignment:
Q  59 ggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| | |||||| ||||||||    
T  53957769 ggaagtgcagagtcatagacttatttgtattt-atcctgagtcaggaacctatgtaacagcgag 53957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 47075365 - 47075477
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga---gccgaatcaaggattaaaat 141  Q
    ||||||||||||||||||||| |||||||| |  || ||||||||||||| ||||| | ||| |||||||||| |||   || || |||||||||||| |    
T  47075365 actaaagtgataacggaagtgtagagtcaggggtttctttgtatttaatcttgagtgacggacctatgtgacaacgaggtgcagagtcaaggattaaagt 47075464  T
Q  142 gactatttactca 154  Q
    ||| |||| ||||    
T  47075465 gaccatttgctca 47075477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 19115161 - 19115237
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||| | ||||||||||||||||||  ||||| ||||||||||||||||||| | ||| |||||||||| ||||    
T  19115161 actaaagtaaaaacggaagtgcagagtcat-gacttctttgtatttaatcctgagtgaaggacctatgtgacatcgag 19115237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 40206003 - 40205934
Alignment:
Q  33 ttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    ||||||||||| |||||| |||||||||||||||| | |||||||||  ||||| ||||||| |||||||    
T  40206003 ttaacgccaatgactaaactgataacggaagtgcacattcagagactactttgtttttaatcgtgagtca 40205934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 19331183 - 19331143
Alignment:
Q  79 ttatttgtatttaatcctgagtcagggatctatgtgacagc 119  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  19331183 ttatttgtatttaatcctgagtcagggacctatgtgacagc 19331143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 47427959 - 47427892
Alignment:
Q  55 taacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||| ||||||| |||||| ||||| ||||||||||||  ||||||| ||| |||||||||||||||    
T  47427959 taacgtaagtgcacagtcagggacttctttgtatttaattttgagtcaaggacctatgtgacagcgag 47427892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 33427860 - 33427791
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtga 115  Q
    ||||||||||||||| |||||||||||||| |  | |||||||||||||||||| ||| ||| ||||||||    
T  33427860 actaaagtgataacgaaagtgcagagtcag-ggttaatttgtatttaatcctgaatcaaggacctatgtga 33427791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 48809668 - 48809697
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcag 74  Q
    ||||||||||||||||||||||||||||||    
T  48809668 actaaagtgataacggaagtgcagagtcag 48809697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 27823754 - 27823722
Alignment:
Q  126 aatcaaggattaaaatgactatttactcataaa 158  Q
    |||||||||||||||||||||||| ||||||||    
T  27823754 aatcaaggattaaaatgactatttcctcataaa 27823722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 8074561 - 8074482
Alignment:
Q  44 aactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  8074561 aactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacttatgtgacagcgagc 8074482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 4593005 - 4592892
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||  |    
T  4593005 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggactt 4592906  T
Q  110 atgtgacagcgagc 123  Q
    ||||||||||||||    
T  4592905 atgtgacagcgagc 4592892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 546050 - 546128
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  546050 actaaagtgataacggaagtgcagagtcaaggacttatctgtatttaatcctgagtcagggacctatgtgacagcgagc 546128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 28591128 - 28591205
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  28591128 actaaagtgataaaggaagtgcagagtcagggatttatttgtatttaatcctgagtcagggacctatgtgacagcgag 28591205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 16611865 - 16611760
Alignment:
Q  17 cacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgac 116  Q
    ||||||||||||| | |||||| ||   ||||||||||||||||||||||| | |||||| ||| |||||||||||||||||||||| || |||||||||    
T  16611865 cacttaacagaattatttaacgtcagagactaaagtgataacggaagtgcataatcagaggcttctttgtatttaatcctgagtcagagacctatgtgac 16611766  T
Q  117 agcgag 122  Q
    ||||||    
T  16611765 agcgag 16611760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 19183059 - 19182982
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| || |||||||||||||||    
T  19183059 actaaagtgataacggaagtgtagagtcaggaacttatttgtatttaatcctgagtcagagacctatgtgacagcgag 19182982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 25590574 - 25590463
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||| |||   |||||| ||   | |||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| ||    
T  25590574 acatcatcacttaacaaaattttttaacgtcagagattaaagtgataacagaagtgcagaatcagagacttatttgtatttaatcc-gagtcagggacct 25590476  T
Q  110 atgtgacagcgag 122  Q
    |||||||||||||    
T  25590475 atgtgacagcgag 25590463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 19186199 - 19186305
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||| ||||||||| |   |||||| |||  |||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||| ||    
T  19186199 acatcatcgcttaacagattgttttaacgacaaggactaaagtgataacggaaatgtagagtcagagacttgtttgtatttaatcctaagtcagggacct 19186298  T
Q  110 atgtgac 116  Q
    |||||||    
T  19186299 atgtgac 19186305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 2464778 - 2464700
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||| ||| |||| |||||||||||    
T  2464778 actaaagtgataacgtaagtgcagagttagggacttatttgtatttaatcatgagtcatggacctatatgacagcgagc 2464700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 544758 - 544685
Alignment:
Q  44 aactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgaca 117  Q
    ||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| |||||    
T  544758 aactaaatttataacggaagtgcagagtcagtgacttatttgtatttaatcctgagtcagagacctatctgaca 544685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 9538063 - 9538140
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |||| ||||| ||||    
T  9538063 actaaaatgataacggaagtgcacaatcagagacttctttgtatttaatcctgagtcagggacctatatgacaacgag 9538140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 32641742 - 32641818
Alignment:
Q  47 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||||| ||| |||||| |||||    
T  32641742 taaagtgataacggaagtgcagagtcagcaacttatttgtatttaatcttgagtaagggacctacgtgacaacgagc 32641818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 40612640 - 40612751
Alignment:
Q  12 atcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctat 111  Q
    |||||||||||||||| |   |||||| ||  || ||||||||||||||||||||||||||||  |  ||| ||||||||||||||||||||||| |||     
T  40612640 atcatcacttaacagatttttttaacgtcaggaattaaagtgataacggaagtgcagagtcaggaaaatatctgtatttaatcctgagtcagggacctac 40612739  T
Q  112 gtgacagcgagc 123  Q
    ||||||| ||||    
T  40612740 gtgacagtgagc 40612751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 2466788 - 2466865
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||  || |||||||| ||||||    
T  2466788 actaaagtgataacggaagtgcagagttagggacttatttttatttaatcctgaatcaatgacctatgtgatagcgag 2466865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 8075847 - 8075924
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||| ||||||||| ||||| |||| ||||||||||||| ||| |||||||||||| | ||||||||    
T  8075847 actaaagtgataacgaaagtgcagaatcagatacttttttgtatttaatcttgaatcagggatctatctaacagcgag 8075924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 9537166 - 9537055
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    ||||||||||||| || ||| | |||||| || | ||||||||||||| ||||||||| |||||  ||||| |||||||||||| || |||||| || ||    
T  9537166 acatcatcacttaccataattatttaacgtcagtgactaaagtgataatggaagtgcacagtca-tgacttctttgtatttaattctaagtcagagacct 9537068  T
Q  110 atgtgacagcgag 122  Q
    |||||||||||||    
T  9537067 atgtgacagcgag 9537055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 16979136 - 16979044
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    |||||||||||||||||||||||||||||  |   |||||| |||||||| |||| |||||| || |||||||||| ||||||| ||||||||    
T  16979136 acatcatcacttaacagaataacttaacgttagagactaaaatgataacgtaagtacagagttagggacttatttgcatttaattctgagtca 16979044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 21069433 - 21069321
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||| |||   |||||| ||   | |||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||| || ||    
T  21069433 acatcatcacttaacaaaattttttaacggcatatattaaagtgaaaacagaagtgcagagtcaaggacttatttgtatttaatcctgagtcagagacct 21069334  T
Q  110 atgtgacagcgag 122  Q
     ||||||| ||||    
T  21069333 ctgtgacaacgag 21069321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 4594118 - 4594176
Alignment:
Q  49 aagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatc 108  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  4594118 aagtgataatggaagtgcagagtcat-gacttatttgtatttaatcctgagtcagggatc 4594176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 14891161 - 14891234
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||| ||||||||||||    ||| |||||||| |||||||| || |||||||||||||||    
T  14891161 actaaagtgataacggaagtgtagagtcagagac----ttgcatttaatcatgagtcagagacctatgtgacagcgag 14891234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 14881057 - 14881010
Alignment:
Q  44 aactaaagtgataacggaagtgcagagtcagagacttatttgtattta 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  14881057 aactaaagtgataacggaagtgcagagtcagggacttatttgtgttta 14881010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 18004747 - 18004696
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcct 96  Q
    ||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  18004747 actaaagtgataacggaagtgcagagtcatagacctctttgtatttaatcct 18004696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 18400284 - 18400226
Alignment:
Q  60 gaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacag 118  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||| ||| |||||||||||    
T  18400284 gaagtgcagagtcagtgacttctttttatttaatcctgagtcaaggacctatgtgacag 18400226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 32640397 - 32640324
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacag 118  Q
    |||||||||||||| |||||  ||||| || ||||||||||||||||||||||||| | ||  |||||||||||    
T  32640397 actaaagtgataacagaagtttagagttagggacttatttgtatttaatcctgagttatggtcctatgtgacag 32640324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 13483126 - 13483070
Alignment:
Q  48 aaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagg 104  Q
    |||||||||||| ||||||||||| |||||||| ||| ||||||||| |||||||||    
T  13483126 aaagtgataacgaaagtgcagagtaagagacttctttatatttaatcatgagtcagg 13483070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 13483174 - 13483218
Alignment:
Q  49 aagtgataacggaagtgcagagtcagagacttatttgtatttaat 93  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  13483174 aagtgataacggaagtgcaaagtcagagacttgtttgtatttaat 13483218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 31947051 - 31947099
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaat 93  Q
    ||||||||||||||||||||  ||||||| |||||| ||||||||||||    
T  31947051 actaaagtgataacggaagtctagagtcatagacttgtttgtatttaat 31947099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 13651173 - 13651208
Alignment:
Q  84 tgtatttaatcctgagtcagggatctatgtgacagc 119  Q
    ||||||||||||||||||||||| ||||||||||||    
T  13651173 tgtatttaatcctgagtcagggacctatgtgacagc 13651208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 28589843 - 28589739
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   |||||| || |||||||||| || ||||| | |  ||||||||||||||  ||||||||||| ||    
T  28589843 acatcatcacttaacagatttttttaacgtcagagactaaaatggtaacggaagtacaaagtcaaaaatgtatttgtatttaattatgagtcagggacct 28589744  T
Q  110 atgtg 114  Q
    |||||    
T  28589743 atgtg 28589739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 116164 - 116086
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  116164 actaaagtgataacggaagtgcatagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagc 116086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 53771035 - 53771140
Alignment:
Q  17 cacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgac 116  Q
    ||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||| |||||||||    
T  53771035 cacttaacagaattatttaacgtcaatgactaaagtgataacggaagtgcagagtcaggggcttctttgtatttaattctgagtcagggacctatgtgac 53771134  T
Q  117 agcgag 122  Q
    | ||||    
T  53771135 aacgag 53771140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 42278193 - 42278051
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   | ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||| ||    
T  42278193 acatcatcacttaacagatttttttaacgtcagggattaaagtgataacggaagtgcagagtcaggaacttatttgtatttaatcccgagtcagggacct 42278094  T
Q  110 atgtgacagcga---gccgaatcaaggattaaaatgactattt 149  Q
    |||||||||| |   || |||||||||| |||| |||||||||    
T  42278093 atgtgacagcaagctgcagaatcaaggactaaagtgactattt 42278051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 47874673 - 47874595
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgagc 123  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  47874673 actaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcttgagtcagggacctatgtgatagcgagc 47874595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 47878498 - 47878575
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |||||| ||||||||    
T  47878498 actaaagtgataacggaagtgtagagtcagggacttatttgtatttaatccagagtcagggacctatgtaacagcgag 47878575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 4703196 - 4703308
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||| ||||| | |||| ||||   ||||||||||||||||||||| | ||||| |||||| |||||||||||| |||||| ||||| ||    
T  4703196 acatcatcacttaatagaattatttaatgccagagactaaagtgataacggaagtgtacagtcaaagacttctttgtatttaattctgagttagggacct 4703295  T
Q  110 atgtgacagcgag 122  Q
    |||||||||||||    
T  4703296 atgtgacagcgag 4703308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 26172956 - 26173013
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26172956 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtca 26173013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 54574532 - 54574457
Alignment:
Q  47 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||||||| |   ||||||||||||||||||||||||||| || |||||||||||||||    
T  54574532 taaagtgataacggaagtgcagagttaagaacttatttgtatttaatcctgagtcagagacctatgtgacagcgag 54574457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 31844828 - 31844754
Alignment:
Q  48 aaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||| ||||||| ||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  31844828 aaagtgataagggaagtgtagagttagggacttgtttgtatttaatcctgagtcagggacctatgtgacagcgag 31844754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 53770470 - 53770372
Alignment:
Q  17 cacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtga 115  Q
    ||||||||||||| | |||||| ||   |||| |||||||| ||||||||||||||| |||||| |||||||||||| |||||||||| | ||||||||    
T  53770470 cacttaacagaattatttaacggcagagactagagtgataatggaagtgcagagtcatagacttctttgtatttaattctgagtcaggaacctatgtga 53770372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 19050382 - 19050298
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatc 94  Q
    |||||||||||||| ||||| | |||||| |    |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  19050382 acatcatcacttaatagaattatttaacgtcggagactaaagtgataacggaagtgcagagtccgagacttctttgtatttaatc 19050298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 39869064 - 39868954
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||| ||| | |||||| ||   |||||||||||||||||||||||||||| || |||| ||||||||||||  ||||||||||| ||    
T  39869064 acatcatcacttaacataattatttaacgtcagagactaaagtgataacggaagtgcagagtc-ga-acttgtttgtatttaattatgagtcagggacct 39868967  T
Q  110 atgtgacagcgag 122  Q
     ||| ||||||||    
T  39868966 ttgtaacagcgag 39868954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 48740006 - 48740106
Alignment:
Q  17 cacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgac 116  Q
    ||||||||||||| | |||||| ||   |||||||||||||| ||||||||||||  | ||||| ||||||||||||  ||||||||||||||| |||||    
T  48740006 cacttaacagaattatttaacgtcagggactaaagtgataacagaagtgcagagttggggacttctttgtatttaattatgagtcagggatctacgtgac 48740105  T
Q  117 a 117  Q
    |    
T  48740106 a 48740106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 50694893 - 50694797
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    ||||||||||||||||||||   |||||| ||   ||||||| ||||||||||||||||| ||||| |||||||| ||||||||  |||||||||||    
T  50694893 acatcatcacttaacagaattttttaacgtcagggactaaagagataacggaagtgcagaatcagaaacttatttatatttaattttgagtcaggga 50694797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 54574822 - 54574876
Alignment:
Q  48 aaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  54574822 aaagtgataacagaagtgcagagttagagatttatttgtatttaatcctgagtca 54574876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 4701907 - 4701797
Alignment:
Q  12 atcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctat 111  Q
    |||||||||||||||||| | |||||  ||   |||||||||||| |||||||||| |||| | ||||| ||||||||||||| | |||||  || || |    
T  4701907 atcatcacttaacagaattatttaacatcagggactaaagtgatagcggaagtgcatagtcggggacttctttgtatttaatcataagtcatagaccttt 4701808  T
Q  112 gtgacagcgag 122  Q
    |||||||||||    
T  4701807 gtgacagcgag 4701797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 21621932 - 21621871
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    ||||||||||||||||||||||| | |||  ||||  |||||||||||||||||||||||||    
T  21621932 actaaagtgataacggaagtgcacattcaatgactattttgtatttaatcctgagtcaggga 21621871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 26170749 - 26170691
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    ||||||||||||| ||||||||||||| ||  |||||||||||||||||| | ||||||    
T  26170749 actaaagtgataatggaagtgcagagtaaggaacttatttgtatttaatcttaagtcag 26170691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 2786333 - 2786273
Alignment:
Q  42 ataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    ||||||||| |||||||||||||||| | |||  || | ||||||||||||||||||||||    
T  2786333 ataactaaaatgataacggaagtgcacattcaaggagtaatttgtatttaatcctgagtca 2786273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 39870653 - 39870765
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    ||||||| ||| |||||||| | ||||||||    ||| |||||||| ||||||||||||||||| || || | ||| ||||||| ||| ||||| |  |    
T  39870653 acatcattactcaacagaattatttaacgcctgagactgaagtgatatcggaagtgcagagtcagtgatttctctgtgtttaatcttgactcaggaactt 39870752  T
Q  110 atgtgacagcgag 122  Q
    |||||||||||||    
T  39870753 atgtgacagcgag 39870765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 19051253 - 19051303
Alignment:
Q  53 gataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    ||||||| ||||| |||||||||||||| |||||||||||||  |||||||    
T  19051253 gataacgaaagtgtagagtcagagacttctttgtatttaatctcgagtcag 19051303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 21623131 - 21623192
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    |||||||||||||| |||||||| | |||  ||||  ||||||||||||||||| |||||||    
T  21623131 actaaagtgataacagaagtgcacattcaaggactattttgtatttaatcctgaatcaggga 21623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 24753540 - 24753597
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgca 67  Q
    ||||||||| |||||| ||| | ||||||| ||| |||||||||||||| ||||||||    
T  24753540 acatcatcagttaacaaaattatttaacgcgaatgactaaagtgataacagaagtgca 24753597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 26685436 - 26685508
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||||| |||||  ||||| | |||||||||     ||| ||||| |||||||||||||||    
T  26685436 actaaagtgataacggaagtgcatagtcaaggacttctatgtatttaa-----agtgagggacctatgtgacagcgag 26685508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 44158591 - 44158554
Alignment:
Q  67 agagtcagagacttatttgtatttaatcctgagtcagg 104  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  44158591 agagtcagggacttctttgtatttaatcctgagtcagg 44158554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 7945568 - 7945645
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  7945568 actaaagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacctatgtgacagcgag 7945645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 10333165 - 10333278
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   ||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||    
T  10333165 acatcatcacttaacagatttttttaacgctagagactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcagagacct 10333264  T
Q  110 atgtgacagcgagc 123  Q
    |||| |||||||||    
T  10333265 atgtaacagcgagc 10333278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 32665749 - 32665862
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |    ||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||    
T  32665749 acatcatcacttaacagatttttgtaacgccagggactaaagtgataacggaagtgcagagtcaaagacttatttgtatttaatcatgagtcagagacct 32665848  T
Q  110 atgtgacagcgagc 123  Q
    ||||||||||||||    
T  32665849 atgtgacagcgagc 32665862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 5783095 - 5783200
Alignment:
Q  17 cacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgac 116  Q
    ||||||||||||| | ||||||| | | |||||||||||||||||||||||||||||  ||||| |||||||||||| |||||||  |||||||||||||    
T  5783095 cacttaacagaattatttaacgctagtgactaaagtgataacggaagtgcagagtcatggacttctttgtatttaattctgagtcgaggatctatgtgac 5783194  T
Q  117 agcgag 122  Q
    ||||||    
T  5783195 agcgag 5783200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 52440573 - 52440649
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga 121  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  52440573 actaaagtgataatggaagtgcagagtcagagacttatttatatttaatcctgactcagggacctatgtgacagcga 52440649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 9341039 - 9341109
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtga 115  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  9341039 actaaagtgataacagaagtgcaaagtcagagacttatttgtatttaatcctgagtcagggacctatgtga 9341109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 9339790 - 9339677
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   |||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| ||    
T  9339790 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcggggatttatttgtatttaatcctgagtcagggacct 9339691  T
Q  110 atgtgacagcgagc 123  Q
    |||| ||| |||||    
T  9339690 atgtaacaacgagc 9339677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 6613993 - 6614051
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6613993 actaaaatgataactgaagtgcagagtcagagacttatttgtatttaatcctgagtcag 6614051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 10333128 - 10333018
Alignment:
Q  12 atcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctat 111  Q
    |||||||||||||||| |   |||||| |||  |||||| |||||||||||||||||||| || ||||||||| ||||||||||||| ||| ||| ||||    
T  10333128 atcatcacttaacagatttttttaacgtcaaggactaaaatgataacggaagtgcagagtaagggacttatttatatttaatcctgaatcaaggacctat 10333029  T
Q  112 gtgacagcgag 122  Q
    |||||| ||||    
T  10333028 gtgacaacgag 10333018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 5782523 - 5782446
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||| ||||||||| | |||||||||| ||||||||||||| |||||||| || |||||||||||||||    
T  5782523 actaaagtgataagggaagtgcataatcagagacttctttgtatttaatcatgagtcagagacctatgtgacagcgag 5782446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 7944264 - 7944187
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||| |||||||| |||||||||||||  ||||||||||||||||||  ||||||||||| |||||||||||||||    
T  7944264 actaaattgataacgaaagtgcagagtcaaggacttatttgtatttaattttgagtcagggacctatgtgacagcgag 7944187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 22856789 - 22856732
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  22856789 actaaagtgataacggaagtgcagagttagagacttctttgtatttaatcctgagtca 22856732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 50107185 - 50107275
Alignment:
Q  13 tcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||||| |||||| ||| | ||||||||||  ||||||||||||||||||||||| | |||||||||  ||||||||||||||||| ||||    
T  50107185 tcatcagttaacataattatttaacgccaaggactaaagtgataacggaagtgcacattcagagactattttgtatttaatcctgaatcag 50107275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 6612563 - 6612470
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||| ||||||||||| ||| | |||||| ||   | ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  6612563 acataatcacttaacaaaattatttaacgtcagggattaaagtgataatggaagtgcagagtcagagacttgtttgtatttaatcatgagtcag 6612470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 52439619 - 52439510
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||||| |   |||||| ||   |||||||||||||||||| |||||||    |||||||| |||||||||||||||| ||| || ||    
T  52439619 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaaatgcagag----agacttatctgtatttaatcctgagccagagacct 52439524  T
Q  110 atgtgacagcgagc 123  Q
    ||||||||||||||    
T  52439523 atgtgacagcgagc 52439510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 25037988 - 25037926
Alignment:
Q  44 aactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    |||||||||||||||| |||| ||||||||| ||||| ||||||||||||| |||||||||||    
T  25037988 aactaaagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcaggga 25037926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 25043200 - 25043138
Alignment:
Q  44 aactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcaggga 106  Q
    |||||||||||||||| |||| ||||||||| ||||| ||||||||||||| |||||||||||    
T  25043200 aactaaagtgataacgtaagtccagagtcagtgacttctttgtatttaatcatgagtcaggga 25043138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 3117757 - 3117700
Alignment:
Q  46 ctaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||| ||||||||    
T  3117757 ctaaagtgataacggaagtggagagtcagagatttctttgtatttaatcttgagtcag 3117700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 34088449 - 34088532
Alignment:
Q  11 catcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatc 94  Q
    ||||||||||||||| ||| | |||| | |||  | ||||||||||  |||||||||||||||||||||| |||||||||||||    
T  34088449 catcatcacttaacataattatttaatgtcaaggattaaagtgatagtggaagtgcagagtcagagacttctttgtatttaatc 34088532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 8975301 - 8975196
Alignment:
Q  12 atcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctat 111  Q
    ||||||| |||||| ||| | ||||||||||  ||||||||||||||| ||||||| | |||  ||||  ||| ||||||||| ||||||||||| || |    
T  8975301 atcatcaattaacaaaattatttaacgccaaagactaaagtgataacgaaagtgcatattcatggactactttatatttaatcttgagtcagggaccttt 8975202  T
Q  112 gtgaca 117  Q
    ||||||    
T  8975201 gtgaca 8975196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 534574 - 534648
Alignment:
Q  47 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||| |||||| |||||||| ||||| ||||||||||||||||| ||| | | |||||| ||||||||    
T  534574 taaagtgataacagaagtgtagagtcag-gacttgtttgtatttaatcctgaatcaagaacctatgtaacagcgag 534648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 44020088 - 44020037
Alignment:
Q  52 tgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| ||||||||    
T  44020088 tgataacgtaagtgcagagtcagagacttctttatatttaatcttgagtcag 44020037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 22857558 - 22857621
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtca 73  Q
    |||||||||||||||| ||| | |||||| ||   ||||||||||||||||||||||| |||||    
T  22857558 acatcatcacttaacataattatttaacgtcatggactaaagtgataacggaagtgcaaagtca 22857621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 32664647 - 32664564
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    |||||||||||||||| | |  ||||||| |||  ||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  32664647 acatcatcacttaaca-attttcttaacgtcaaggactaaagtgataacggaagtgcagag--------ttatttgtatttaatcctgagtca 32664564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 1001263 - 1001206
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtca 102  Q
    |||||| ||||||| |||||||| | |||||||||  |||||||||||||| ||||||    
T  1001263 actaaactgataacagaagtgcacattcagagactactttgtatttaatcccgagtca 1001206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 11060798 - 11060875
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||| ||||||  | |||| ||||  ||||||||||||  ||||||| ||| || ||||||||||||    
T  11060798 actaaagtgataacgaaagtgcccattcagggactattttgtatttaattttgagtcatggacctttgtgacagcgag 11060875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 44719459 - 44719382
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||| |||||||||||||||| | ||| | |||  ||| ||||||||||||||| || ||||| ||||||| ||||    
T  44719459 actaaaatgataacggaagtgcatattcataaactactttatatttaatcctgagttagagatctttgtgacaacgag 44719382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 30748108 - 30747995
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga---gccgaatcaaggattaaaat 141  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||   || |||||| ||| |||| |    
T  30748108 actaaagtgataacgaaagtgtagagtcagagacttgtttgtatttaatcctaagtcagggacctatgtgacagcgaggtgcagaatcagggactaaagt 30748009  T
Q  142 gactatttactcat 155  Q
    |||||||| |||||    
T  30748008 gactatttgctcat 30747995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 31219062 - 31218987
Alignment:
Q  47 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||||||||||| | ||| |||||||||||||||    
T  31219062 taaagtgataacggaagtgcagagtcaggaacttctttgtatttaatcctgagttaaggacctatgtgacagcgag 31218987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 31219174 - 31219251
Alignment:
Q  45 actaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcgag 122  Q
    |||||||||||||||||||||  |||||||  |||| ||||||||||||||||||| |  || |||||||||||||||    
T  31219174 actaaagtgataacggaagtgtcgagtcaggaacttctttgtatttaatcctgagttaatgacctatgtgacagcgag 31219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 23508092 - 23507984
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||| ||||||||||| || || |||||| ||   ||||||||||||| ||||||| | ||||| ||| || ||||||||||||||||| ||||| | ||    
T  23508092 acattatcacttaacaaaaaaatttaacgacagggactaaagtgataaaggaagtgtaaagtcatagatttgtttgtatttaatcctgaatcaggaacct 23507993  T
Q  110 atgtgacag 118  Q
    |||||||||    
T  23507992 atgtgacag 23507984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 24940543 - 24940477
Alignment:
Q  9 gacatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcaga 75  Q
    ||||||||||||||||| ||| | ||||||| |  |||||||||||| | |||||||||||||||||    
T  24940543 gacatcatcacttaacataattatttaacgctagaaactaaagtgatgaaggaagtgcagagtcaga 24940477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 6468811 - 6468871
Alignment:
Q  61 aagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacagcga 121  Q
    ||||||| | |||||||||  ||||||||||||| ||||||||||| || |||||||||||    
T  6468811 aagtgcacattcagagactattttgtatttaatcatgagtcagggacctttgtgacagcga 6468871  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 31239966 - 31240036
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagactt 80  Q
    |||||||||||||||||||| | |||||| |    || ||| ||||||||||| |||||||||||||||||    
T  31239966 acatcatcacttaacagaatcatttaacgtctgggacgaaaatgataacggaaatgcagagtcagagactt 31240036  T

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Target: scaffold0767 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 5742 - 5650
Alignment:
Q  11 catcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcag 103  Q
    ||||||||| ||||| ||| | |||||||||   ||||||||||||||||||||| |||||||| ||||| |||||||||||| |||||||||    
T  5742 catcatcacataacataattatttaacgccagagactaaagtgataacggaagtgtagagtcagggacttctttgtatttaattctgagtcag 5650  T

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Target: scaffold0039 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 79217 - 79105
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||||| ||| | |||||| |||  |||||||||||| |||| ||||| |||||  ||||| ||| ||||||||| ||||||| ||| ||    
T  79217 acatcatcacttaacaaaattatttaacgtcaaagactaaagtgatatcggaggtgcaaagtcaaggacttctttttatttaatcatgagtcaaggacct 79118  T
Q  110 atgtgacagcgag 122  Q
    |||||||||||||    
T  79117 atgtgacagcgag 79105  T

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Target: scaffold0039; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 79662 - 79809
Alignment:
Q  10 acatcatcacttaacagaataacttaacgccaataactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatct 109  Q
    |||||||||||||| | ||| | |||||| |||  |||||| ||||||  ||| |||||||||| |||||| ||||||||||||| ||||||||| |  |    
T  79662 acatcatcacttaataaaattatttaacgtcaaagactaaaatgataatagaaatgcagagtcaaagacttctttgtatttaatcatgagtcaggaactt 79761  T
Q  110 atgtgacagcga---gccgaatcaaggattaaaatgactatttactca 154  Q
    |||| ||| |||   ||||| ||| |||||||| ||||||||| ||||    
T  79762 atgtaacaacgaggtgccgagtcagggattaaagtgactatttgctca 79809  T

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Target: scaffold0039; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 74331 - 74400
Alignment:
Q  49 aagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgagtcagggatctatgtgacag 118  Q
    |||||||| | || ||| |||||||  ||||| ||||||||||||| ||||| ||||| |||||||||||    
T  74331 aagtgatatcagaggtgtagagtcaaggacttctttgtatttaatcatgagttagggacctatgtgacag 74400  T

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