View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_low_33 (Length: 282)
Name: NF14297_low_33
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 48815923 - 48816179
Alignment:
| Q |
17 |
attattgtgcttccaaatgctttataggattgtgccaaaacatgcaaccttggtttgaggcaaccattgcaataaaagaaaaatcaatgctgcagcgtta |
116 |
Q |
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| T |
48815923 |
attattgtgcttccaaatgctttataggattgtgccaaaacatgcaaccttggtttgaggcaacctttgcaataaaagaaaaatcaatgttgcagcgtta |
48816022 |
T |
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| Q |
117 |
tattcttgtagtagagttacagttgcatcttacaaaacaacaccatttcgccacacttgaacatcc----attagacattcaaataaaatgtgaagtttg |
212 |
Q |
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| T |
48816023 |
tattcttgtagtagagttacagttgcatcttacaaaacaacaccatttcgccacacttgaacatccattaattagacattcaaataaaatgtgaattttg |
48816122 |
T |
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| Q |
213 |
tcctcgtagttgtggttgcaatcgacacaagtagtcagacaatttatacctctattc |
269 |
Q |
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| T |
48816123 |
tcctcgtagttgtggttgcaatcgacacaagtagtcagacaatttatacctctattc |
48816179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 21623397 - 21623153
Alignment:
| Q |
23 |
gtgcttccaaatgctttataggattgtgccaaaacatgcaaccttggtttgaggcaaccattgcaataaaagaaaaatcaatgctgcagcgttatattct |
122 |
Q |
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| T |
21623397 |
gtgcttccaaattctccataggattgtggcaaattatgtaaccttggttttaggaaaacgctgcaataagagaaaaattgatgtcgtagcgttataacct |
21623298 |
T |
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| Q |
123 |
tgtagtagagttacagttgcatcttacaaaacaacaccatttcgccacacttgaacatccattagacattcaaataaaatgtgaagtttgtcctcgtagt |
222 |
Q |
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| T |
21623297 |
tgatgtaaagttgcagttacatcttgcaaaagaccaccatttcgccacacttgaacaactcttggccattcaaataaaatgtgaatttcgtcctcgtagt |
21623198 |
T |
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| Q |
223 |
tgtggttgcaatcgacacaagtagtcagacaatttatacctctat |
267 |
Q |
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| T |
21623197 |
tgtgattgcaaacaacacatgtagtcgaacaatttatacctctat |
21623153 |
T |
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