View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14297_low_44 (Length: 224)
Name: NF14297_low_44
Description: NF14297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14297_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 2358314 - 2358212
Alignment:
| Q |
104 |
ttttccttctgaaattatacatagccattgattaagaaataaatatggttgagagtgtacgtgatgagatatatacagagtagcattaattcgttttgca |
203 |
Q |
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| T |
2358314 |
ttttccttctgaaattatacatagccattgattaagaaataaatatggttgagagtgtacgtgatgagatatatacagagtagcattaattcgttttgca |
2358215 |
T |
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| Q |
204 |
agt |
206 |
Q |
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||| |
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| T |
2358214 |
agt |
2358212 |
T |
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Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 2358457 - 2358359
Alignment:
| Q |
9 |
tgtcgaagaatatctataatattaattgttggtatatcatataatgtttgagatatgaatgatatattatagttcttaacagcaatatattctaatttt |
107 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2358457 |
tgtcaaagaaaatctataatattaattgttggtatatcatataatgttttagatatgaatgatatattatagttcttaacagcaatatattctaatttt |
2358359 |
T |
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