View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14298_high_1 (Length: 737)

Name: NF14298_high_1
Description: NF14298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14298_high_1
NF14298_high_1
[»] chr3 (1 HSPs)
chr3 (18-725)||(50372414-50373117)


Alignment Details
Target: chr3 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 18 - 725
Target Start/End: Original strand, 50372414 - 50373117
Alignment:
Q  18 agctagtcctagtttattttggttcaattacagagacgacggtaactataattaccgtacctacactttctgttgttattcccttttcactaagaattca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50372414 agctagtcctagtttattttggttcaattacagagacgacggtaactatgattaccgtacctacactttctgttgttattcccttttcactaagaattca 50372513  T
Q  118 gaatgctttcctttgttcctcttacatttccttcaatttccattgcactgtaatttttatgaaccaaaactttgaccttccaaattcctgcaaatataac 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50372514 gaatgctttcctttgttcctcttacatttccttcaatttcctttgcactgtaatttttatgaaccaaaactttgaccttccaaattcctgcaaatataac 50372613  T
Q  218 caatatcaactgagctaaggaagaaacagagcattcaaattgaattagaataaagaaaaatgataataatagaatagaaagcaggaactataacaagagg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  50372614 caatatcaactgagctaaggaagaaacagagcattcaaattgaattagaataa-gaaaaatgataataatagaatagaaagcgggaactataacaagagg 50372712  T
Q  318 aaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctggctggttttcagaataaggttcaaatgtgcttaaaattcaaatattatta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  50372713 aaacaaattcatttgaccgtcccgttataaaatcctagtaatacagtctggctggttttcagaataaggttcaaatgtgcttaaaattcaaatatt---a 50372809  T
Q  418 aattagcctagtgcataaacgagaacaacttaagctattctcaataaaaatgttgcagaatgtaactttttaaaatgcaattgctacaagtaaatgtgtc 517  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50372810 aattagcctagagcataaacgagaacaacttaagctattctcaataaaaatgttgcagaatgtaactttttaaaatgcaattgctacaagtaaatgtgtc 50372909  T
Q  518 aatgacctttgatacaaacacaatttatttattcatcgaaaaagattatatatatgtatacacaatttatttattcaagtgaacagaatcagcaaaagta 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50372910 aatgacctttgatacaaacacaatttatttattcatcgaaaaagattatatatatgtatacacaatttatttattcaagtgaacagaatcagcaaaagta 50373009  T
Q  618 acagcttcataaagcgtaatcaaagaaaacagataaagcagaacccctggggtggtgattttcaaagctaaacctcttgttccaaagaaacaaagtaaac 717  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50373010 acagcttcataaagcgtaatcaaagaaaacggttaaagcagaacccctggggtggtgattttcaaagctaaacctcttgttccaaagaaacaaagtaaac 50373109  T
Q  718 gtgagaat 725  Q
    || |||||    
T  50373110 gttagaat 50373117  T

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