View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14298_low_2 (Length: 504)

Name: NF14298_low_2
Description: NF14298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14298_low_2
NF14298_low_2
[»] chr3 (8 HSPs)
chr3 (10-487)||(1187670-1188147)
chr3 (122-304)||(1303413-1303585)
chr3 (122-304)||(1205523-1205695)
chr3 (175-323)||(1301602-1301747)
chr3 (65-132)||(1301444-1301511)
chr3 (347-411)||(1301805-1301869)
chr3 (249-308)||(8031968-8032028)
chr3 (60-134)||(5358972-5359045)
[»] scaffold0438 (2 HSPs)
scaffold0438 (347-399)||(9066-9118)
scaffold0438 (347-399)||(12180-12232)
[»] chr8 (3 HSPs)
chr8 (347-399)||(26294688-26294740)
chr8 (347-399)||(26307945-26307997)
chr8 (347-399)||(26342019-26342071)
[»] chr2 (2 HSPs)
chr2 (64-123)||(43873819-43873878)
chr2 (64-122)||(43862928-43862986)


Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Complemental strand, 1188147 - 1187670
Alignment:
Q  10 tccaagaatataaggtctagatctcacacagcgaacagaaacaaataatcaggtagattttggctcctttgcaggtcagacagacaagaggcgcaaagtg 109  Q
    ||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1188147 tccaataatataaggtctagatctcacacaccaaacagaaacaaataatcaggtagattttggctcctttgcaggtcagacagacaagaggcgcaaagtg 1188048  T
Q  110 taaaacaaaaagtcattgaagatcttaagtcgtcaatttaccgtcccaagagacattccaacacaagtcaaaatgaatcaaacaaattcatgagagcaat 209  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1188047 taaaacaaaaagtcattgaagatcttaagtcatcattttaccgtcccaagagacattccaacacaagtcaaaatgaatcaaacaaattcatgagagcaat 1187948  T
Q  210 tatttattaaaaggcatagattgtattactattacatattgggaaaatttaagtacatatgatttaattgtgcacaagtattttgttttgtgattcaagg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||     
T  1187947 tatttattaaaaggcatagattgtattactattacatattgggaaaatttaagtacatatgatttaattgtgcacatgtcttttgttttgtgattcaaga 1187848  T
Q  310 cacaaacacacacaagttaggagcacctacgaggcctaagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacatattcatggaa 409  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1187847 cacacacacacacaagttaggagcacctacgaggactaagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacatattcatggaa 1187748  T
Q  410 aacagagaagggatacaaaaatgaaattatgcgacaatctacctttaaaaagtttcattctcgatgatgtgaaccttt 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1187747 aacagagaagggatacaaaaatgaaattatgcgacaatctacctttaaaaagtttcattctcgatgatgtgaaccttt 1187670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 122 - 304
Target Start/End: Original strand, 1303413 - 1303585
Alignment:
Q  122 tcattgaagatcttaagtcgtcaatttaccgtcccaagagacattccaacacaagtcaaaatgaatcaaacaaattcatgagagcaattatttattaaaa 221  Q
    ||||||||||||||||||| ||| |||| || ||||||||||||||||||||          ||||||||||||||||||||||||| | ||||||||||    
T  1303413 tcattgaagatcttaagtcatcattttaacggcccaagagacattccaacac----------gaatcaaacaaattcatgagagcaactgtttattaaaa 1303502  T
Q  222 ggcatagattgtattactattacatattgggaaaatttaagtacatatgatttaattgtgcacaagtattttgttttgtgatt 304  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||| ||||    
T  1303503 ggcatcgattgtattactattacatattggggaaatttaaggacatatgatttaattgtgcacatgtcttttgttttgcgatt 1303585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 122 - 304
Target Start/End: Complemental strand, 1205695 - 1205523
Alignment:
Q  122 tcattgaagatcttaagtcgtcaatttaccgtcccaagagacattccaacacaagtcaaaatgaatcaaacaaattcatgagagcaattatttattaaaa 221  Q
    ||||||||||||||||||| ||| |||| || ||||||||||||||||||||          ||||||||||||||||||||||||| | ||||||||||    
T  1205695 tcattgaagatcttaagtcatcattttaacggcccaagagacattccaacac----------gaatcaaacaaattcatgagagcaactgtttattaaaa 1205606  T
Q  222 ggcatagattgtattactattacatattgggaaaatttaagtacatatgatttaattgtgcacaagtattttgttttgtgatt 304  Q
    |||||  ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||||||| ||||    
T  1205605 ggcatcaattgtattactattacataatgggaaaatttaaggacatatgatttaattgtgcacatgtcttttgttttgcgatt 1205523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 1301602 - 1301747
Alignment:
Q  175 agtcaaaatgaatcaaacaaattcatgagagcaattatttattaaaaggcatagattgtattactattacatattgggaaaatttaagtacatatgattt 274  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||   ||||||||||||||||||||| |||||||||||    
T  1301602 agtcaaaatgaaccaaacaaattcatgagagcaattattcattaaaaggcatcgtttgtattac--atacatattgggaaaatttaagcacatatgattt 1301699  T
Q  275 a-attgtgcacaagtattttgttttgtgattcaaggcacaaacacacaca 323  Q
    |  |||||||||||  |||| | |||||||||||  |||| |||||||||    
T  1301700 atgttgtgcacaag--ttttttattgtgattcaacacacacacacacaca 1301747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 1301444 - 1301511
Alignment:
Q  65 gattttggctcctttgcaggtcagacagacaagaggcgcaaagtgtaaaacaaaaagtcattgaagat 132  Q
    |||||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||    
T  1301444 gattttggcttctttgcaggtaagacaaacaagaggcacaaagtgtaaaacaaaaagtcaatgaagat 1301511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 1301805 - 1301869
Alignment:
Q  347 aagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacatattcatggaaaa 411  Q
    |||||||||||||||||||| ||||||| ||||||| ||| ||||||||||| ||||||||||||    
T  1301805 aagctactctatcatgtgattcaagttgtatgcatgcaaacaaacacacacacattcatggaaaa 1301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 8031968 - 8032028
Alignment:
Q  249 tgggaaaatttaagtacatatgatttaatt-gtgcacaagtattttgttttgtgattcaag 308  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||    
T  8031968 tgggaaaatttaagcacatatgatttattttgtgcacaagtattttgtcttgtgattcaag 8032028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 5358972 - 5359045
Alignment:
Q  60 aggtagattttggctcctttgcaggtcagacagacaagaggcgcaaagtgtaaaacaaaaagtcattgaagatct 134  Q
    ||||||||||||||| |||| |||||||||||  |||||||| |||||||||||| ||||||||| |||| ||||    
T  5358972 aggtagattttggcttcttt-caggtcagacaatcaagaggcacaaagtgtaaaataaaaagtcaatgaaaatct 5359045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 9118 - 9066
Alignment:
Q  347 aagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacat 399  Q
    |||||||||| ||||| ||| ||||||||||||||| ||| ||||||||||||    
T  9118 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacat 9066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 12232 - 12180
Alignment:
Q  347 aagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacat 399  Q
    |||||||||| ||||| ||| ||||||||||||||| ||  ||||||||||||    
T  12232 aagctactctttcatgcgattcaagttgcatgcatgcaagcaaacacacacat 12180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 26294740 - 26294688
Alignment:
Q  347 aagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacat 399  Q
    |||||||||| ||||| ||| ||||||||||||||| ||| ||||||||||||    
T  26294740 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacat 26294688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 26307997 - 26307945
Alignment:
Q  347 aagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacat 399  Q
    |||||||||| ||||| ||| ||||||||||||||| ||| ||||||||||||    
T  26307997 aagctactctttcatgcgattcaagttgcatgcatgcaaacaaacacacacat 26307945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 26342071 - 26342019
Alignment:
Q  347 aagctactctatcatgtgatacaagttgcatgcatgtaaagaaacacacacat 399  Q
    |||||||||| ||||| ||| ||||||||||||||| ||  ||||||||||||    
T  26342071 aagctactctttcatgcgattcaagttgcatgcatgcaagcaaacacacacat 26342019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 43873819 - 43873878
Alignment:
Q  64 agattttggctcctttgcaggtcagacagacaagaggcgcaaagtgtaaaacaaaaagtc 123  Q
    ||||||||| | |||||| ||||||||| |||||||||  || |||||||||||||||||    
T  43873819 agattttggattctttgctggtcagacaaacaagaggcaaaaggtgtaaaacaaaaagtc 43873878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 43862928 - 43862986
Alignment:
Q  64 agattttggctcctttgcaggtcagacagacaagaggcgcaaagtgtaaaacaaaaagt 122  Q
    ||||||||| | ||||||||||| ||||  ||||| || ||||||||||||||||||||    
T  43862928 agattttggattctttgcaggtcggacaagcaagatgcacaaagtgtaaaacaaaaagt 43862986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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