View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14298_low_6 (Length: 260)

Name: NF14298_low_6
Description: NF14298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14298_low_6
NF14298_low_6
[»] chr7 (5 HSPs)
chr7 (139-254)||(9281247-9281361)
chr7 (139-254)||(9292218-9292332)
chr7 (1-55)||(9281445-9281499)
chr7 (1-55)||(9292416-9292470)
chr7 (171-241)||(43856788-43856857)
[»] chr2 (2 HSPs)
chr2 (139-202)||(1296239-1296302)
chr2 (169-237)||(13413263-13413330)
[»] chr4 (1 HSPs)
chr4 (168-237)||(53619497-53619565)
[»] chr8 (1 HSPs)
chr8 (168-216)||(3187881-3187929)
[»] chr5 (1 HSPs)
chr5 (164-216)||(35310355-35310407)
[»] scaffold0406 (1 HSPs)
scaffold0406 (168-204)||(6799-6835)
[»] scaffold0009 (1 HSPs)
scaffold0009 (168-216)||(103017-103065)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 9281361 - 9281247
Alignment:
Q  139 ggtaaacagacaacaaactgcgctattaaacctttttggattgcaaaaccaattctcctaaacacaccattaatggactttaagagtcatgacattgttg 238  Q
    ||||| ||||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  9281361 ggtaagcagacaacaaactgcaccgttaagcctttttggattgcaaaaccaattctcctaaacacaacattaatggac-ttaagagtcatgacattgttg 9281263  T
Q  239 tgctgtacatgaccct 254  Q
    ||||||||||||||||    
T  9281262 tgctgtacatgaccct 9281247  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 9292332 - 9292218
Alignment:
Q  139 ggtaaacagacaacaaactgcgctattaaacctttttggattgcaaaaccaattctcctaaacacaccattaatggactttaagagtcatgacattgttg 238  Q
    ||||| ||||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  9292332 ggtaagcagacaacaaactgcaccgttaagcctttttggattgcaaaaccaattctcctaaacacaacattaatggac-ttaagagtcatgacattgttg 9292234  T
Q  239 tgctgtacatgaccct 254  Q
    ||||||||||||||||    
T  9292233 tgctgtacatgaccct 9292218  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9281499 - 9281445
Alignment:
Q  1 ctgcctaactgcaacctttgtttttcatcaggatatgaacatgtcttaaacaccc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9281499 ctgcctaactgcaacctttgtttttcatcaggatatgaacatgtcttaaacaccc 9281445  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9292470 - 9292416
Alignment:
Q  1 ctgcctaactgcaacctttgtttttcatcaggatatgaacatgtcttaaacaccc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292470 ctgcctaactgcaacctttgtttttcatcaggatatgaacatgtcttaaacaccc 9292416  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 43856788 - 43856857
Alignment:
Q  171 tttttggattgcaaaaccaattctcctaaacacaccattaatggactttaagagtcatgacattgttgtgc 241  Q
    ||||||||| |||||| |||||||| |||||| | |||| |||||| | | ||||||||||||||||||||    
T  43856788 tttttggatagcaaaatcaattctcgtaaacataacattcatggacct-aggagtcatgacattgttgtgc 43856857  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 1296302 - 1296239
Alignment:
Q  139 ggtaaacagacaacaaactgcgctattaaacctttttggattgcaaaaccaattctcctaaaca 202  Q
    |||||||| |||||||||||| |  ||| |||||||||||||| ||||||||||||| ||||||    
T  1296302 ggtaaacaaacaacaaactgcacctttagacctttttggattgtaaaaccaattctcataaaca 1296239  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 13413263 - 13413330
Alignment:
Q  169 cctttttggattgcaaaaccaattctcctaaacacaccattaatggactttaagagtcatgacattgtt 237  Q
    ||||||||||| ||||||||||||||| |||||||| |||| ||||||  || ||| ||||||||||||    
T  13413263 cctttttggatggcaaaaccaattctcataaacacaacattcatggac-ctaggagacatgacattgtt 13413330  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 53619497 - 53619565
Alignment:
Q  168 acctttttggattgcaaaaccaattctcctaaacacaccattaatggactttaagagtcatgacattgtt 237  Q
    |||||||||||| ||||||||||||||| |||||||| |||| ||||||  |||||| ||| ||||||||    
T  53619497 acctttttggatggcaaaaccaattctcgtaaacacaacattcatggac-ctaagagacataacattgtt 53619565  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 3187881 - 3187929
Alignment:
Q  168 acctttttggattgcaaaaccaattctcctaaacacaccattaatggac 216  Q
    |||||||||||| ||||||||||||||| |||||||| |||| ||||||    
T  3187881 acctttttggatggcaaaaccaattctcgtaaacacaacattcatggac 3187929  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 35310355 - 35310407
Alignment:
Q  164 ttaaacctttttggattgcaaaaccaattctcctaaacacaccattaatggac 216  Q
    |||||||| ||||||| ||||||||||||||| |||||||| |||| ||||||    
T  35310355 ttaaacctctttggatggcaaaaccaattctcgtaaacacaacattcatggac 35310407  T

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Target: scaffold0406 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 6799 - 6835
Alignment:
Q  168 acctttttggattgcaaaaccaattctcctaaacaca 204  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  6799 acctttttggatggcaaaaccaattctcgtaaacaca 6835  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 103017 - 103065
Alignment:
Q  168 acctttttggattgcaaaaccaattctcctaaacacaccattaatggac 216  Q
    |||||||||||| ||||||||||| ||| |||||||| |||| ||||||    
T  103017 acctttttggatggcaaaaccaatcctcgtaaacacaacattcatggac 103065  T

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