View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14299_high_1 (Length: 653)
Name: NF14299_high_1
Description: NF14299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14299_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 136 - 640
Target Start/End: Complemental strand, 43657910 - 43657405
Alignment:
| Q |
136 |
ccatgtatgctagctacagagaaccagtatcttcctttgagaaaatcagcatcaatactatgccattgattgcgagatatatgaagtgcatgtattatgt |
235 |
Q |
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| T |
43657910 |
ccatgtatgctagctacagagaaccggtactttcctttgagaaaatcggcatggatattatgccattgattgcgagatatatgaagtgcatgtattatgt |
43657811 |
T |
|
| Q |
236 |
taacatcactgtatgagcaggcaggattgtgagtgaaattacaagcaggtaccaaagacaaaaaaccatagattttgatatctatattcttttttctttt |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43657810 |
taacatcactgtatgagcaggcaggattgtgagtgcaattacaagcaggtaccaaagacaaaaaaccatagattttgatatctatattcttttttctttt |
43657711 |
T |
|
| Q |
336 |
gaaggactttagcaatggtaagtaaggaactccattttttgcacacaagcctagcattatcgagactttcgaatggaacacgatccaaacacatttcaag |
435 |
Q |
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| T |
43657710 |
gaaggactttagcaatggtaatcaaggaactccattttttgcacacaagcctagcattatcgagactttcgcatgcaacacgatccaaacacatttcaag |
43657611 |
T |
|
| Q |
436 |
aatatcattgggaagaagaaaaatttcggactttacttcaacggatttctttgtgttttgttgtctattccaaaacctctccttcaccccaaagccacat |
535 |
Q |
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| T |
43657610 |
aataccatcgggaagaagaaagatttcggactttacttcaatggatttctctgtgttttgttgtctattccaaaacctctccttcaccccaaagccacat |
43657511 |
T |
|
| Q |
536 |
gagaagaagcgaccaacagaggtttcttctacttcatctttggggctacaaacaaaagcactt-cttcccaacttcttcccatctcttctgacgctttaa |
634 |
Q |
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| T |
43657510 |
gagaagaagcgacctacagaggtttcttctacttcatctttggggctacaaacaaaagcacttgatgaccaacttcttcccatctcttctgacgctttaa |
43657411 |
T |
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| Q |
635 |
ctattc |
640 |
Q |
| |
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|||||| |
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| T |
43657410 |
ctattc |
43657405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 43658007 - 43657938
Alignment:
| Q |
18 |
agatggcatattatgccatgattctgtgataggattaaaaaacatcacctctttgtgtgtgataccgctg |
87 |
Q |
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| T |
43658007 |
agatggcatattatgccatgattttgtgatagaattaaaaaacatcacctctttgtgtgtgatacagctg |
43657938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 351 - 491
Target Start/End: Complemental strand, 10367479 - 10367339
Alignment:
| Q |
351 |
tggtaagtaaggaactccattttttgcacacaagcctagcattatcgagactttcgaatggaacacgatccaaacacatttcaagaatatcattgggaag |
450 |
Q |
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||||||| ||||||||||| || ||||| ||||||||| |||| | ||||| ||||||||||| |||||||||||||| ||||||||| |||| ||||| |
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| T |
10367479 |
tggtaaggaaggaactccaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaattcaagaatgtcatcaggaag |
10367380 |
T |
|
| Q |
451 |
aagaaaaatttcggactttacttcaacggatttctttgtgt |
491 |
Q |
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| T |
10367379 |
aagaaagagtccagactctacttcaacgcattcctttgtgt |
10367339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 353 - 477
Target Start/End: Complemental strand, 10379002 - 10378878
Alignment:
| Q |
353 |
gtaagtaaggaactccattttttgcacacaagcctagcattatcgagactttcgaatggaacacgatccaaacacatttcaagaatatcattgggaagaa |
452 |
Q |
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||||| ||||||||||| || ||||| |||||||| |||| | ||||||||| ||||||| || || |||||||| ||||||||| |||| ||||||| |
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| T |
10379002 |
gtaaggaaggaactccaattcttgcaagcaagcctaacattcttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaa |
10378903 |
T |
|
| Q |
453 |
gaaaaatttcggactttacttcaac |
477 |
Q |
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|||| |||||||||| ||||||||| |
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| T |
10378902 |
gaaagatttcggactgtacttcaac |
10378878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 10379227 - 10379137
Alignment:
| Q |
114 |
tcctccaacaatgaagattccgccatgtatgctagctacagagaaccagtatcttcctttgagaaaatcagcatcaatactatgccattga |
204 |
Q |
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| T |
10379227 |
tcctccaacaatgattattccatcatttatgctagcaacagagaacatggaccttcctttgagaatgtcagcatctatactatgccattga |
10379137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 443
Target Start/End: Complemental strand, 10371120 - 10371031
Alignment:
| Q |
353 |
gtaagtaaggaactccattttttgcacacaagcctagcattatcgagactttcgaatggaacacgatccaaacacatttcaagaatatcat |
443 |
Q |
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| T |
10371120 |
gtaattaaggaactccattatttgaacacgagcctagcattctaggaacttttgagtggaa-accacccaaacacatttgaagaatatcat |
10371031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 532
Target Start/End: Complemental strand, 10367314 - 10367262
Alignment:
| Q |
480 |
atttctttgtgttttgttgtctattccaaaacctctccttcaccccaaagcca |
532 |
Q |
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| T |
10367314 |
atttctttgggttgtgttgcctcttccaaaaccactccttcaccccgaagcca |
10367262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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