View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14299_high_2 (Length: 525)
Name: NF14299_high_2
Description: NF14299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14299_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Complemental strand, 4223675 - 4223192
Alignment:
| Q |
11 |
attattctcacaaatttgaagattgtgtgtgaatcatattgtt-aattaacatcacttttgattttccttttttgttgtggtttaaggtgatattgacta |
109 |
Q |
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| T |
4223675 |
attattctcacaaatttgaagattgtgtgtgaatcatagtgtttaattaatatcacttttgattttccttttatgttgtggtttaaggtgatattgacta |
4223576 |
T |
|
| Q |
110 |
gattattcttatattaattaaaaagaaggaataaatagtatgataatagaaatgggatagggtttgcggtt--tggtggacatatatgaagctaaaaaag |
207 |
Q |
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| T |
4223575 |
gatttttcttatattaattaaaaagaaggaataaatagtattataatagaaatgggatagggttttcggttgatggtggacatatatgaagctaaaaaag |
4223476 |
T |
|
| Q |
208 |
cttagtggtaattgattgtg-ttgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagcacataaaaagtgcagctaaaat |
306 |
Q |
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| T |
4223475 |
cttagtggtaattgattgtaattgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagtacataaaaagtgcagctaaaat |
4223376 |
T |
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| Q |
307 |
tttgagtggaataaccaattgtaatgaaattgacataaaaaatttgatgagccttttagattatatttggtag-----ttataacataattgaggtttat |
401 |
Q |
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| T |
4223375 |
tttgagtggaataaccaattgtaatgaaatttacataaaaaatttcatgagccttttagtttgtatttggtagttaatttataacataattgaggtttat |
4223276 |
T |
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| Q |
402 |
ctgagcccttagctttgcagttgtaaccgcaaaagttttgagaaaagaaacaaatatataagaaaaaagaagattaaatgttgaata |
488 |
Q |
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| T |
4223275 |
ctgaggccttagctttgctattttaaccgcaaaagttttgag-gaagaaacaaatatattaggaaaa--aagattaaatgttaaata |
4223192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 370 - 487
Target Start/End: Original strand, 43002701 - 43002819
Alignment:
| Q |
370 |
tatttggtagttataacataattgaggtttatctgagcccttagctttgcagttgtaaccgcaaaagttttgagaaaagaaacaaatatataag--aaaa |
467 |
Q |
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|||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |
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| T |
43002701 |
tatttgctagttataacataattgaggcttatctgagcctttagctttgcagttgtaaccgcaaaagtattgag-gaagaaacaaatatataaggaaaaa |
43002799 |
T |
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| Q |
468 |
aagaagattaaatgttgaat |
487 |
Q |
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| T |
43002800 |
aagaagattgaaggttgaat |
43002819 |
T |
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