View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14299_high_9 (Length: 285)
Name: NF14299_high_9
Description: NF14299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14299_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 4899715 - 4899971
Alignment:
| Q |
19 |
tttgataccatataaacggggcttgagtctcatccaaaaacctagttcatgaggtatatcatttgaaatacatagtatatatgacatgatcatgtgaagc |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4899715 |
tttgataccatataaacggtgcttgagtctcatccaaaaacctagttcatgaggtatatcatttgaaatacatagtatatatgacatgatcatgtgaagc |
4899814 |
T |
|
| Q |
119 |
aaatccattaatcatccaataatcatataattaattgaaaggtaaagattaggggaaagagagagaagatattagaggctgcaacttgatcagttccatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4899815 |
aaatccattaatcatccaataatcatataattaattgaaaggtaaagattaggggaaagagagagaagatattagaggctgcaacttgatcagttccatg |
4899914 |
T |
|
| Q |
219 |
cagggaatgtgcagaacatgctgtacatttcgtgctgcctcactgtcccctcctttg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4899915 |
cagggaatgtgcagaacatgctgtacatttcgtgctgcctcactgtcccctcctttg |
4899971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University