View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14299_low_10 (Length: 268)
Name: NF14299_low_10
Description: NF14299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14299_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 9097951 - 9097708
Alignment:
| Q |
9 |
agcacagagtcacgcacaaacaccaaacacgacttggacacgtcaacactggtaataatttgagacataattcaatataattatatgcgccgctgtgggt |
108 |
Q |
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| T |
9097951 |
agcacagagtcacgcacaaacaccaaacacgacttggacacgtcaacactggtaataatttgagacataattcaatataattatatgtgccggtgtcggt |
9097852 |
T |
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| Q |
109 |
atgtccaacaccggacacgcctaatcctaggagtatttgagcttcataggtcatgtaactaactactgaaatatatttggcacagtaaaaccagtgtgaa |
208 |
Q |
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| T |
9097851 |
atgtccaacaccggacacgcctaatccaaggagtatctgagcttcataggtcatgtaactaactactgaaatatatttggcacagtaaaaccagtgtgaa |
9097752 |
T |
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| Q |
209 |
caagcgaattatgaatttgcatatttgacaaagaaagaactaac |
252 |
Q |
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| T |
9097751 |
caagcgaattatgaatttgcatatttgacaaagaaagaactaac |
9097708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 11596439 - 11596396
Alignment:
| Q |
116 |
acaccggacacgcctaatcctaggagtatttgagcttcataggt |
159 |
Q |
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| T |
11596439 |
acactggacacgcctaatccgaggagtatttgtgcttcataggt |
11596396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 36314616 - 36314578
Alignment:
| Q |
121 |
ggacacgcctaatcctaggagtatttgagcttcataggt |
159 |
Q |
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| T |
36314616 |
ggacacgcctaatcctaggagtatatgtgcttcataggt |
36314578 |
T |
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