View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14299_low_13 (Length: 244)
Name: NF14299_low_13
Description: NF14299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14299_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 38058260 - 38058045
Alignment:
| Q |
10 |
agaagcataggaccgaccctcaaagtcatggccaccacttcggattcgaatctgcaggttgtggatttgtgaacagattatggttgtttgaatttgggaa |
109 |
Q |
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| T |
38058260 |
agaaacataggaccgaccctcaaaatcatggccaccgcttcggattcgaatctgcaggttgtggatttgtgaacagattatggttgtttgaatttgggaa |
38058161 |
T |
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| Q |
110 |
atctgtttaggtgtgataatgacaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgatgagtaagaggaat |
209 |
Q |
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| T |
38058160 |
atctgtttaggtgtgataatgaaaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgatgagtaagaggaat |
38058061 |
T |
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| Q |
210 |
tggttttggtgtacac |
225 |
Q |
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|||||||||||||||| |
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| T |
38058060 |
tggttttggtgtacac |
38058045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 38062194 - 38062409
Alignment:
| Q |
10 |
agaagcataggaccgaccctcaaagtcatggccaccacttcggattcgaatctgcaggttgtggatttgtgaacagattatggttgtttgaatttgggaa |
109 |
Q |
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|||| |||||||||||||||| ||||| ||||| || |||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |
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| T |
38062194 |
agaaacataggaccgaccctcgaagtcgtggccgccgcttcggattcgaatctgcaggtcatgtctttgggaacagattatggttgtttgaatttgggaa |
38062293 |
T |
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| Q |
110 |
atctgtttaggtgtgataatgacaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgatgagtaagaggaat |
209 |
Q |
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| T |
38062294 |
atatgtttaggtgtgataatgacaagaggtttcggtgttgttttggatgcaaatctgagattttgagtggtaaattggagtattgatgagtaagaggaat |
38062393 |
T |
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| Q |
210 |
tggttttggtgtacac |
225 |
Q |
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|||||||||||||||| |
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| T |
38062394 |
tggttttggtgtacac |
38062409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 38072574 - 38072373
Alignment:
| Q |
24 |
gaccctcaaagtcatggccaccacttcggattcgaatctgcaggttgtggatttgtgaacagattatggttgtttgaatttgggaaatctgtttaggtgt |
123 |
Q |
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||||||| ||||| ||||||||||| || |||||||| |||| | ||| ||| ||||||||||||| ||||||||| |||||||| ||| ||||||| |
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| T |
38072574 |
gaccctcgaagtcgtggccaccactacgaattcgaatttgcatgccatggtgttgggaacagattatggctgtttgaatatgggaaatttgtgtaggtgt |
38072475 |
T |
|
| Q |
124 |
gataatgacaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgatgagtaagaggaattggttttggtgtac |
223 |
Q |
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| T |
38072474 |
gataatgacaaggggttttggtgtttcattggttgcaaatctgaggttttgaattgaaaatttgagtattgatgagtaagaggaattggtttttgtgtac |
38072375 |
T |
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| Q |
224 |
ac |
225 |
Q |
| |
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|| |
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| T |
38072374 |
ac |
38072373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 38081657 - 38081458
Alignment:
| Q |
26 |
ccctcaaagtcatggccaccacttcggattcgaatctgcaggttgtggatttgtgaacagattatggttgtttgaatttgggaaatctgtttaggtgtga |
125 |
Q |
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||||||||||||||||| ||||| ||| |||||||||| ||| || |||| ||||| ||||||| ||||||||| |||||| | | |||||||| |
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| T |
38081657 |
ccctcaaagtcatggcccccactacgggttcgaatctggaggccatgattttgggaacaaattatggctgtttgaatatgggaaggttctagaggtgtga |
38081558 |
T |
|
| Q |
126 |
taatgacaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgatgagtaagaggaattggttttggtgtacac |
225 |
Q |
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| T |
38081557 |
tgatgacaagtggttttggtgttttgtaggatgcaaatcttagattttgagttgtaaatttgagtactggtgagtaagagggattggttttggtgtacac |
38081458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 38086093 - 38085883
Alignment:
| Q |
15 |
cataggaccgaccctcaaagtcatggccaccacttcggattcgaatctgcaggttgtggatttgtgaacagattatggttgtttgaatttgggaaatctg |
114 |
Q |
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|||| ||| ||||||||||||| || || || || || ||||||||||||||| ||||| ||| ||||| |||| ||||| |||||| |||||||| | |
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| T |
38086093 |
cataagacagaccctcaaagtcgtgaccgccgctgcgaattcgaatctgcaggctgtggtattgggaacaaattacggttgcttgaatatgggaaatttc |
38085994 |
T |
|
| Q |
115 |
tttaggtgtgataatgacaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgatgagtaagaggaattggtt |
214 |
Q |
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| T |
38085993 |
tagaggtgtgacaattacaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgatgtgtatgatgaattggct |
38085894 |
T |
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| Q |
215 |
ttggtgtacac |
225 |
Q |
| |
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||||||||||| |
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| T |
38085893 |
ttggtgtacac |
38085883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 37953922 - 37953867
Alignment:
| Q |
10 |
agaagcataggaccgaccctcaaagtcatggccaccacttcggattcgaatctgca |
65 |
Q |
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|||| |||||||| |||| || |||| |||||||||||||||||||||||||||| |
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| T |
37953922 |
agaaacataggacagaccttcgtagtcgtggccaccacttcggattcgaatctgca |
37953867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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