View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14299_low_14 (Length: 240)
Name: NF14299_low_14
Description: NF14299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14299_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 33882581 - 33882701
Alignment:
| Q |
5 |
gagtgagaagaatgagcttagtgtctctgttgttactgttactggttctgctggttcgggtaagtctacgttggccaaaaagttttgttgggatgaacaa |
104 |
Q |
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| T |
33882581 |
gagtaagaagaatgagcttagtgtctctgttgttactgttactggttctggtggttcgggtaagtctacgttggccaaaaagttttgctgggatgaacaa |
33882680 |
T |
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| Q |
105 |
gtaaaaggtatgattctgtta |
125 |
Q |
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| T |
33882681 |
gtaaaaggtatgattctgtta |
33882701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 33866738 - 33866854
Alignment:
| Q |
11 |
gaagaatgagcttagtgtctctgttgttactgttactggttctgctggttcgggtaagtctacgttggccaaaaagttttgttgggatgaacaagtaaaa |
110 |
Q |
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| T |
33866738 |
gaaggatgaggttagtgtttctgttgttactgttactggttctggtggttcggggaaatctacgttggccaaaaggttttgttgggatgaagaagttaaa |
33866837 |
T |
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| Q |
111 |
ggtatgattctgttaat |
127 |
Q |
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| T |
33866838 |
ggtatgattttgttaat |
33866854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 33882697 - 33882745
Alignment:
| Q |
178 |
tgttatctatgaaacaaacttagtagaggtccttttaatggaagttatt |
226 |
Q |
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| T |
33882697 |
tgttatctatgaaacaaacttagtagaggtcattttaatggaagttatt |
33882745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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