View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14299_low_3 (Length: 485)
Name: NF14299_low_3
Description: NF14299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14299_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 5576631 - 5576236
Alignment:
| Q |
16 |
cactaattatgtccatgcgttagaattagactatatctctgatctttaaatctgatacttttaacaaagttccctcattttaaattaaaggttatgcaca |
115 |
Q |
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| T |
5576631 |
cactaattatgttcatgcgttagaattagactatatctctgatctttaaatctgatacttttaacaaagttccctcattttaaattaaaggttatgcata |
5576532 |
T |
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| Q |
116 |
acacaactttatgtttgaactgctcttccaatca--tgttgatgatctcttcgccattttaacatctctccaactactgcgttttgttttctttttgaca |
213 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5576531 |
acacaactttatgtttgaactgctctaccaatcatgtgttgatgatctcatcgccattttaacatctctccaactactgcgttttgttttctttttgaca |
5576432 |
T |
|
| Q |
214 |
ttgtttcaatccattgcccatagacagaataactgnnnnnnncttgccacatccagctcacaaagttctcctctcctatttcattggcgagctgaagtgg |
313 |
Q |
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|||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5576431 |
ttgtttcaatccattgcccatagatagaataattttttttttcttgccacatccagctcacaaagttctcctctcctatttcattggcgagctgaagtgg |
5576332 |
T |
|
| Q |
314 |
aagctccatgagagaagacgatacagtgcaagaccattgtttggggctgtttgtatagtaacaggtttttatgatttgatttctgcataattgtct |
409 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5576331 |
aagctccatgagagaagacgatacagtgcaagactattgtttggggctgtttgtatagtaacaggtttttatgatttgacttctgcataattgtct |
5576236 |
T |
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