View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14299_low_7 (Length: 377)
Name: NF14299_low_7
Description: NF14299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14299_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 982906 - 983257
Alignment:
| Q |
16 |
caacaagtctctcaaccgacctccatgtgattatgttataatgttgtatgttgtgttcactgattgagattgttctatattgtacattaatgagtttata |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
982906 |
caacaagtctctcaaccgacctccacgtgattatgttataatgttgtatgttgtgttcactgattgagattgttctatattgtacattaatgagtttata |
983005 |
T |
|
| Q |
116 |
catgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcgtgaactgaactgctatggtaaattaattatatagtacaagtttgtacaagaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
983006 |
catgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcatgaactgaactgctatggtaaattaataatatagtacaagtttgtacaagaa |
983105 |
T |
|
| Q |
216 |
aaaatatagtacaatttaaacatttgctacaaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaaggg |
315 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
983106 |
aaaatatagtacagtttaaacatttgctacaaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaaggg |
983205 |
T |
|
| Q |
316 |
tctttctttttaaagcatcttgtgtcttggtcatgcattcaaatttcctatg |
367 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
983206 |
tctttctttttaaagtatcttgtgtcttggtcatgcattcaaatttcctatg |
983257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 262 - 369
Target Start/End: Original strand, 40413224 - 40413331
Alignment:
| Q |
262 |
gtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
361 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40413224 |
gtattgtatatgtcaaacagttgatgatgtaaatggtagaagatatttcgagggtatttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
40413323 |
T |
|
| Q |
362 |
cctatgct |
369 |
Q |
| |
|
||| |||| |
|
|
| T |
40413324 |
cctttgct |
40413331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University