View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_12 (Length: 463)
Name: NF1429_high_12
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 44884340 - 44883892
Alignment:
| Q |
1 |
tgagtatgatcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884340 |
tgagtatgatcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaat |
44884241 |
T |
|
| Q |
101 |
ggtcacttttataatcatgcgtggtttgtggaagctctcaacaactcagggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcc |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44884240 |
ggtcacttttataatcatgcatggtttgtggaagctctcaacaactcagggattctgtctcgtgttgtttcagattctgcagctgctgttgataactgcc |
44884141 |
T |
|
| Q |
201 |
tcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatgttgattattcagt |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884140 |
tcctcaacctcgatgattatgatattagtgcttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatgttgattattcagt |
44884041 |
T |
|
| Q |
301 |
gcctgtggaggaggaggaggagaagaacatgtttaattattcaattgctaatcttcgagttcgtgttgatcatgacgatgatggtagcggggcgaagcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44884040 |
gcctgtggaggaggaggaggagaagaacatgtttaattattcaattgctaatcttcgagttcgtgttgatcatgacgatgatggtagcggggtgaagcaa |
44883941 |
T |
|
| Q |
401 |
gagcagaggcttaggatggaacaacagcatgataacaactttgataatg |
449 |
Q |
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| T |
44883940 |
gagcagaggcttaggatggaacaacagcatgaaaacaactttgataatg |
44883892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 49 - 393
Target Start/End: Original strand, 8994206 - 8994574
Alignment:
| Q |
49 |
cagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactca |
148 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||| |
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| T |
8994206 |
cagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatca |
8994305 |
T |
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| Q |
149 |
gggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaa |
248 |
Q |
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| T |
8994306 |
gggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaa |
8994405 |
T |
|
| Q |
249 |
atactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga------------------ggaggaggaggagaagaacat |
330 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |||||||| | |||||| ||| ||||||||| ||||||| |
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| T |
8994406 |
atactaataat---gttaaaaaggagcatttgattgatgttgactattcagttcttgtggatgatgatgatgaggaggaggaagaggaggaggagaacat |
8994502 |
T |
|
| Q |
331 |
gtttaattattcaattgctaatc---------ttcgagttcgtgttgatcatgacgatgatggtagcggggc |
393 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||||||| |
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| T |
8994503 |
gtttaattattcagttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
8994574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 49 - 309
Target Start/End: Original strand, 9028863 - 9029120
Alignment:
| Q |
49 |
cagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatggtcacttttataatcatgcgtggtttgtggaagctctcaacaactca |
148 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||| ||||| ||| |
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| T |
9028863 |
cagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaatca |
9028962 |
T |
|
| Q |
149 |
gggattctgtctcgtgttgtttcggattctgcagctgctgttgataactgcctcctcaacctcgatgattatgatattaatgcttcaagtaatgacgaaa |
248 |
Q |
| |
|
|||||||| |||||||||||||| | |||||| || | ||| |||||||||||||||||||| |||||||||||| ||| |||||||| ||||| |||| |
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| T |
9028963 |
gggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatgaaa |
9029062 |
T |
|
| Q |
249 |
atactaataataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga |
309 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |
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| T |
9029063 |
atac---taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtgga |
9029120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 9019385 - 9019466
Alignment:
| Q |
10 |
tcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttcc |
91 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||| |
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| T |
9019385 |
tcgtttgtcttcaaacccgtctccttccccttctcgactcagattgttcatgttcatctcaaaaccagatactgctatttcc |
9019466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 393
Target Start/End: Original strand, 9007176 - 9007334
Alignment:
| Q |
256 |
taataatgttatcaaggagcatttgattgatgttgattattcagtgcctgtgga------------ggaggaggaggagaagaacatgtttaattattca |
343 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |||||| |||||| |||||||||||||||||||| |
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| T |
9007176 |
taataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtggatgatgatgatgaggaggaagaggaggagaacatgtttaattattca |
9007275 |
T |
|
| Q |
344 |
attgctaatc---------ttcgagttcgtgttgatcatgacgatgatggtagcggggc |
393 |
Q |
| |
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||||||||| |||||||||||||||||||||| || |||||||||||||| |
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| T |
9007276 |
gttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
9007334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 393
Target Start/End: Original strand, 9029136 - 9029231
Alignment:
| Q |
307 |
ggaggaggaggaggagaagaacatgtttaattattcaattgctaatcttc---------gagttcgtgttgatcatgacgatgatggtagcggggc |
393 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
9029136 |
ggaggaagaggaggaggagaacatgtttaattaatcagttgctaatcttcctgaaattcgagttcgtgttgatcatgatgacgatggtagcggggc |
9029231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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