View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_13 (Length: 459)
Name: NF1429_high_13
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Original strand, 45380997 - 45381432
Alignment:
| Q |
8 |
ggacatcatcattagcagtagacaccattatttttggcaagaatttctaaactaaaaacatatctagaatcacacacaatgaacacgtctcacattgttc |
107 |
Q |
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| T |
45380997 |
ggacatcaacattagcagtagacaccattatttttggcaagaatttctaaactaaaaacatatctagaatcacacacaatgaacacgtctcacattgttc |
45381096 |
T |
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| Q |
108 |
tattttcgcgtgcaagttaaggatctatatctcgttacttttgctatgttatgaacacaaattctcctcnnnnnnncctatcttaattaatctactccta |
207 |
Q |
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| T |
45381097 |
tattttcgcgtgcaagttaaggatctatatctcgttacttttactatgttatgaacacaaattctcctctttttttcctatcttaattaatctactccta |
45381196 |
T |
|
| Q |
208 |
cctaaataattcaacagttgttacaactgcaaattatacataacactttattcaaggnnnnnnntaatcaatccctcttccacaagaaacatgagctaga |
307 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
45381197 |
cctaaataattcaatagttgttacaactgcaaattatacataacactttattcaaggaaaaaaataatcaatccctcttccacaagaaac--gagctaga |
45381294 |
T |
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| Q |
308 |
tttatatgtaacatattactttttccacttttcctagtttttgaattctaactaggctggcttataaagtttccttgcgatttgcattgttttataattt |
407 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45381295 |
tttatatgtaac--attactttttccacttttcctagtttttgaattctaactaggctggcttataaagtttccttgtgatttgcattgttttataattt |
45381392 |
T |
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| Q |
408 |
caatggcaacaatcagcaacattggcttacaagggaattg |
447 |
Q |
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| T |
45381393 |
caatggcaacaatcagcaacattggcttacaagggaattg |
45381432 |
T |
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