View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_16 (Length: 418)
Name: NF1429_high_16
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 38810904 - 38810514
Alignment:
| Q |
18 |
aaatatgccatatttcaaactcctctttgatgattgaagccatttctttccgtagaaaagcaattcaaactgctcaactacaactatgtactccagaata |
117 |
Q |
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| T |
38810904 |
aaatatgccatatttcaaactcctctttgatgattgaagccatttctttccgtagaaaagcaattcaaactgctcaactacaactatgtactccagaata |
38810805 |
T |
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| Q |
118 |
tgtacattctcaatcttattggaaaattgtagacctatggaaggctgttttggccctagagattatatataaattaatattggaacatatttcaacagct |
217 |
Q |
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| T |
38810804 |
tgtacattctcaatcttattggaaaattgtagacctatggaaggctgttttggccctagagattatatataaattaatattggaacatatttcaacagct |
38810705 |
T |
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| Q |
218 |
cactacactatggaagctatccattgtcaatttgaaatctcccaaatctaggtagctataagaattatacaaggaaaaacaaaattctagccatttttac |
317 |
Q |
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| T |
38810704 |
cactacactatggaagctatccattgtcaatttgaaatctcccaaatctaggtagctataagaattatacaaggaaaaacaaaattctagccatttttac |
38810605 |
T |
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| Q |
318 |
tgctggagcatcaaaataatatatcacctgcatcagagaatgtctcattgtgatgctatgctaccaacagagcctatcctcaagagaataa |
408 |
Q |
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| T |
38810604 |
tgctggagcatcaaaataatatatcacctgcatcagagaatgtctcattgtgatgctatgctaccaacagagcctatcctcaagagaataa |
38810514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 116 - 392
Target Start/End: Complemental strand, 38789430 - 38789158
Alignment:
| Q |
116 |
tatgtacattctcaatcttattggaaaattgtagacctatggaaggctgttttggccctagagattatatataaattaatattggaacatatttcaacag |
215 |
Q |
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| T |
38789430 |
tatgtacatcctaaatcttatagggaaattgtagagctaaagaaggctgttt-ggccctagagattacatataaattcatattggcggatatttcaacag |
38789332 |
T |
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| Q |
216 |
ctcactacactatggaagctatccattgtcaatttgaaatctcccaaatctaggtagctataagaattatacaaggaaaaacaaaa-ttctagccatttt |
314 |
Q |
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| T |
38789331 |
ctcac--cagtatggaggctatccattgtcaagttgaaatctcccaaatctagtca--tggcagaatcgtacaaggaaaaacaaaatttctagcca-ttt |
38789237 |
T |
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| Q |
315 |
tactgctggagcatcaaaat-aatatatcacctgcatcagagaatgtctcattgtgatgctatgctaccaacagagcct |
392 |
Q |
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| T |
38789236 |
tactggttgagcatcagaatgaatctatcacttgcattagagaatgtctcattgcgatgctatgatactaatagagcct |
38789158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 38789486 - 38789427
Alignment:
| Q |
98 |
caactatgtactccagaatatgtacattctcaatcttattgg-aaaattgtagacctatg |
156 |
Q |
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| T |
38789486 |
caactttgtactccagaatatgtacattctcaatcttattggaaaaattatagacctatg |
38789427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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