View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_19 (Length: 402)
Name: NF1429_high_19
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 11025789 - 11026182
Alignment:
| Q |
1 |
catttttcttaagttagctttcataaatgcaggatcaattttaggatcattgttttttatcttgttgattggtggaatctaccatatttatgactcttgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11025789 |
catttttcttaagttagctttcataaatgcaggatcaattttaggatcattgttttttatcttgttgattggtggaatctaccatatttatgactcttac |
11025888 |
T |
|
| Q |
101 |
atactaaagaaagaaaaacaagcaattgtagaaaagtttttagaagactatagagttcttaagcccaccagatactcttatgtagaaatcaagagaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11025889 |
atactaaagaaagaaaaacaagcaattgtagaaaagtttttagaagactatagagttcttaagcccaccagatactcttatgtagaaatcaagagaatca |
11025988 |
T |
|
| Q |
201 |
caaataatttcggggatatgttaggacaaggagcctatggaactgtttataaaggaagcatttcaaaagaatttagtgttgctgtgaagatactaaatgt |
300 |
Q |
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| T |
11025989 |
caaataatttcggggatatgttaggacaaggagcctatggaactgtttataaaggaagcatttcaaaagaatttagtgttgctgtgaagatactaaatgt |
11026088 |
T |
|
| Q |
301 |
ttctcagggaaatggccaagacttcctaaatgaagttggtacaatgagtagaatccaccatgttaatattgtccgattggtcggtttctgtgct |
394 |
Q |
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| T |
11026089 |
ttctcagggaaatggccaagacttcctaaatgaagttggtacaatgagtagaatccaccatgttaatattgtccgattggtcggtttctgtgct |
11026182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 3 - 387
Target Start/End: Original strand, 11040494 - 11040878
Alignment:
| Q |
3 |
tttttcttaagttagctttcataaatgcaggatcaattttaggatcattgttttttatcttgttgattggtggaatctaccatatttatgactcttgcat |
102 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||| ||| |
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| T |
11040494 |
tttttcttaaattagctttcataaatgcaggatcaattttaggatcgttgtttttcatcttgttgattggtggagtcttccatatttatgactcttacat |
11040593 |
T |
|
| Q |
103 |
actaaagaaagaaaaacaagcaattgtagaaaagtttttagaagactatagagttcttaagcccaccagatactcttatgtagaaatcaagagaatcaca |
202 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
11040594 |
actaaggaaagaaaaacaagcaattatagaaaagtttttagaagactatagagctcttaagccaaccagatactcttatgtagaaattaagagaatcaca |
11040693 |
T |
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| Q |
203 |
aataatttcggggatatgttaggacaaggagcctatggaactgtttataaaggaagcatttcaaaagaatttagtgttgctgtgaagatactaaatgttt |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11040694 |
aataatttcggggatatgttaggacaaggagcctatggaactgtttataaaggaagcatttcaaaagaatttagtgttgctgtgaagatactaaatgttt |
11040793 |
T |
|
| Q |
303 |
ctcagggaaatggccaagacttcctaaatgaagttggtacaatgagtagaatccaccatgttaatattgtccgattggtcggttt |
387 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| || ||| ||||||| |
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| T |
11040794 |
ctcagggaaatggccaagacttcctaaatgaagtgggtacaatgggtagaatacaccatgttaatattgttcgtttgatcggttt |
11040878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 10930129 - 10930522
Alignment:
| Q |
1 |
catttttcttaagttagctttcataaatgcaggatcaattttaggatcattgttttttatcttgttgattggtggaatctaccatatttatgactcttgc |
100 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||| || || |||||| ||||||||| ||||| ||||||||||||||||||||||| | |
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| T |
10930129 |
catttttcttaaattaattttcataaatgcaggatcaattttaggttcgttattttttgtcttgttgactggtgcaatctaccatatttatgactcttac |
10930228 |
T |
|
| Q |
101 |
atactaaagaaagaaaaacaagcaattgtagaaaagtttttagaagactatagagttcttaagcccaccagatactcttatgtagaaatcaagagaatca |
200 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||| |||||||| |||| |||||| || ||||||| |
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| T |
10930229 |
atacaaaagaaagaaaaacaagccattatagaaaagtttttagaagattatagagctcttaagcccacaagatactcatatgaagaaattaaaagaatca |
10930328 |
T |
|
| Q |
201 |
caaataatttcggggatatgttaggacaaggagcctatggaactgtttataaaggaagcatttcaaaagaatttagtgttgctgtgaagatactaaatgt |
300 |
Q |
| |
|
|||||||||| || || | |||||||||||| |||||||||||||| |||| ||||||||||||||||||| | | |||||||||||||||||||||||| |
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| T |
10930329 |
caaataattttggcgacaagttaggacaaggtgcctatggaactgtatatagaggaagcatttcaaaagaaatcattgttgctgtgaagatactaaatgt |
10930428 |
T |
|
| Q |
301 |
ttctcagggaaatggccaagacttcctaaatgaagttggtacaatgagtagaatccaccatgttaatattgtccgattggtcggtttctgtgct |
394 |
Q |
| |
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||| || ||||| || ||||| ||||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
10930429 |
ttcacaaggaaacgggcaagatttcctcaatgaagttggtacaatgggtagaatccatcatgttaatattgttagattggtcggtttctgtgct |
10930522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 10992333 - 10992726
Alignment:
| Q |
1 |
catttttcttaagttagctttcataaatgcaggatcaattttaggatcattgttttttatcttgttgattggtggaatctaccatatttatgactcttgc |
100 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||||||||| ||||||| |||||||| ||||||| | |||| | ||||||| |||||||||||| | |
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| T |
10992333 |
catttttcttaaattagttttcataaatccaggatcaattctaggatcgctgttttttgtcttgttaaccggtgcagtctaccacgtttatgactcttac |
10992432 |
T |
|
| Q |
101 |
atactaaagaaagaaaaacaagcaattgtagaaaagtttttagaagactatagagttcttaagcccaccagatactcttatgtagaaatcaagagaatca |
200 |
Q |
| |
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||||| || |||| ||||||||||||| ||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
10992433 |
atactgaacaaagcaaaacaagcaattatagaaaagtttttagaagattatagagctcttaaacccacgagatactcttatgtagaaattaagagaatca |
10992532 |
T |
|
| Q |
201 |
caaataatttcggggatatgttaggacaaggagcctatggaactgtttataaaggaagcatttcaaaagaatttagtgttgctgtgaagatactaaatgt |
300 |
Q |
| |
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||||||| || | || | |||||||||||| |||||||||||||| |||| ||||||||||||||||||| | | |||||||||||||||||||||| | |
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| T |
10992533 |
caaataactttagtgacaagttaggacaaggtgcctatggaactgtatatagaggaagcatttcaaaagaaatcattgttgctgtgaagatactaaattt |
10992632 |
T |
|
| Q |
301 |
ttctcagggaaatggccaagacttcctaaatgaagttggtacaatgagtagaatccaccatgttaatattgtccgattggtcggtttctgtgct |
394 |
Q |
| |
|
|||||| ||||| || ||||| ||||| ||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
10992633 |
ttctcaaggaaacgggcaagatttcctcaatgaagttggtacaattggtagaacccatcatgttaatattgttagattggtcggtttctgtgct |
10992726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 10991327 - 10991372
Alignment:
| Q |
19 |
tttcataaatgcaggatcaattttaggatcattgttttttatcttg |
64 |
Q |
| |
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||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
10991327 |
tttcataaatgcagggtcaattttaggatcaatgttttttatcttg |
10991372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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