View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_2 (Length: 800)
Name: NF1429_high_2
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 394
Target Start/End: Original strand, 32724771 - 32725161
Alignment:
| Q |
12 |
tgagatgaaaaagcaacttaatttattattttgagtgttca-----tttcactagtgtatgttctatgtaatataggtctaggttttattgtatctagga |
106 |
Q |
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| T |
32724771 |
tgagatgaaaaagcaacttaatttattattttgagtgttcatttcatttcactagtgtatgttctatgtaatataggtctaggttttattgtatctagga |
32724870 |
T |
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| Q |
107 |
gcagctagtgaatttgtaacaattcaactaatgttgccagttttcaatctatttccatgttcaaattgatgagtattttttggacgtattactggtttat |
206 |
Q |
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| T |
32724871 |
gcagctgttgaatttgtaacaattgaactaatgttgccagttttcaatctatttccatgttcaaattgatgagtattttttgcacgtattactggtttat |
32724970 |
T |
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| Q |
207 |
gcggacagcatgattttcattagacacattgtcatttgttttgaggattgatacttcaaaatgctcttttattaaatgcccctattgtaattgcatagat |
306 |
Q |
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| T |
32724971 |
gcggacagcatgattttcattagacacattgtcatttgttttgaggattgatacttcaaaatgctcttttattaaatgcccctattgtaattgcatagtt |
32725070 |
T |
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| Q |
307 |
gttcc---nnnnnnnnngttatgaatttaaaggtactcacatttattttgttggtttatcccttttatagattgtagcagcaacaacggtt |
394 |
Q |
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| T |
32725071 |
gttccttttttttttttgttatgaatttaaaggtactcacatttattttgttggtttatcccttttatagattgtagcagcaacaacggtt |
32725161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 575 - 784
Target Start/End: Original strand, 32725843 - 32726052
Alignment:
| Q |
575 |
acttccaattctttggcttcatcaaacatacagatacaaacactttgagaatctaaaacctcttgctgctggcatgccattcattcatcttctccaaagc |
674 |
Q |
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| T |
32725843 |
acttccaattctttggcttcatcaaacatacagatacaaacattttgagaatctaaaacctcttgctgctggcatggcattcgttcatcttctccaaagc |
32725942 |
T |
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| Q |
675 |
catcaactacttgaatgctgagcaatcatacctgactgaggttaacattttccggacaaccctccaagtattcaagggtagtgaggcgatgcatgtcact |
774 |
Q |
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| T |
32725943 |
catcaactacttgaatgctgagcaatcatacctgactgtggttaacattttccggacaaccctccaagtattcaagggtagtgaggcgatgcatgtcact |
32726042 |
T |
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| Q |
775 |
tggaagactc |
784 |
Q |
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| T |
32726043 |
tggaagactc |
32726052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 469 - 541
Target Start/End: Original strand, 32725721 - 32725793
Alignment:
| Q |
469 |
gaattcatgctccacaaaggcagtgacttaaaaagttaaatgatgagtactggcttataaaacaaatacttta |
541 |
Q |
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| T |
32725721 |
gaattcatgctccataaaggcagtgacttaaaaagttaaatgatgagtactggcttataaaacaaatacttta |
32725793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 784
Target Start/End: Original strand, 35945128 - 35945167
Alignment:
| Q |
745 |
ttcaagggtagtgaggcgatgcatgtcacttggaagactc |
784 |
Q |
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| T |
35945128 |
ttcaagggcggtgaggcgatgcatgtcacttggaagactc |
35945167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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