View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_22 (Length: 376)
Name: NF1429_high_22
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 15026230 - 15026578
Alignment:
| Q |
14 |
atatgtaaatgtactaaatcttgaaataataataatgtttgtgtgtatatattctgattaaataactaaaatgcaggcacaatacttgaaaaacgatcca |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15026230 |
atatgtaaatgtactaaatcttgaaataataataatgtttgtgtgtatatattctgattaaataactaaaatgtaggcacaatacttgaaaaacgatcca |
15026329 |
T |
|
| Q |
114 |
gattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcatgttatcaaca |
213 |
Q |
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| T |
15026330 |
gattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcatgttatcaaca |
15026429 |
T |
|
| Q |
214 |
ttagaagtgatatagagtttgtgttcttcactggtggctttctcaccccctgccttgttggaagatccactcctttgagttttgctaatcctaagaagcc |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15026430 |
ttagaagtgatatagaatttgtgttcttcactggtggctttctcaccccgtgccttgtcggaaggtccactcctttgagttttgctaatcctaagaagcc |
15026529 |
T |
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| Q |
314 |
actttatggacatatctcaagtatagattcaactgcaacatcggtaagt |
362 |
Q |
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| T |
15026530 |
actttatggacatatctcaagtatagattcaactgcaacatcggtaagt |
15026578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 83 - 362
Target Start/End: Original strand, 21365698 - 21365977
Alignment:
| Q |
83 |
aatgcaggcacaatacttgaaaaacgatccagattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgt |
182 |
Q |
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|||| ||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||||||| | ||||| ||||||| |||||||||||| |
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| T |
21365698 |
aatgtaggcacagtacttgaaaaacgatccagattacctaagttgcaaaaagaaagaatgcaagaaagagcttaatggaaaatgcattgtgacaacttgc |
21365797 |
T |
|
| Q |
183 |
agtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtgttcttcactggtggctttctcaccccctgccttgttggaagatcca |
282 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |||| |
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| T |
21365798 |
agtggttcaataaagtttcatgttatcaacataagaagtgacatagagtttgtgttctttactggtggctttctcaccccttgccttattggaaggtcca |
21365897 |
T |
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| Q |
283 |
ctcctttgagttttgctaatcctaagaagccactttatggacatatctcaagtatagattcaactgcaacatcggtaagt |
362 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||| |||||| |
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| T |
21365898 |
ctcctttgggttttgctaatcctaacaagccactttatggacatctctcaagcatagattcaactgctacatcagtaagt |
21365977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 139 - 362
Target Start/End: Original strand, 26695899 - 26696122
Alignment:
| Q |
139 |
aatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtgtt |
238 |
Q |
| |
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||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |
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| T |
26695899 |
aatgcaagaaagagcttaatgggaaatgcattgtgacaacttgtagtggttcaataaagtttcatgttacaaacataagaagtgacatagaatttgtgtt |
26695998 |
T |
|
| Q |
239 |
cttcactggtggctttctcaccccctgccttgttggaagatccactcctttgagttttgctaatcctaagaagccactttatggacatatctcaagtata |
338 |
Q |
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||| |||||||| ||||||| |||||||||| ||||||| |||||||||||| | ||| |||||||||| |||||||||||||||||| ||||||| ||| |
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| T |
26695999 |
ctttactggtgggtttctcagcccctgcctttttggaaggtccactcctttgggattttctaatcctaacaagccactttatggacatctctcaagcata |
26696098 |
T |
|
| Q |
339 |
gattcaactgcaacatcggtaagt |
362 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
26696099 |
gattcaactgcaacatcagtaagt |
26696122 |
T |
|
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