View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_23 (Length: 363)
Name: NF1429_high_23
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 11025699 - 11025357
Alignment:
| Q |
8 |
aaattatactagctagccttagcttatgtcattgattgattgtaaaggatattaatatcccaagtatttgtcttaattgatgcttgaaatacaccctatt |
107 |
Q |
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| T |
11025699 |
aaatcatactagctagccttagcttatgtcattgattgattgtaaaggatattaatatcccaagtatttgtcttaattgatgcttgaaatacaccctatt |
11025600 |
T |
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| Q |
108 |
ctgtcctttttgttcatccataatcaaannnnnnngaatttgatacatcatcttttgttgatccaaagatcttttataaatagaatcagagagagtactt |
207 |
Q |
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| T |
11025599 |
ctgtcctttttgttcatccataatcaaatttttttgaatttgatacatcatcttttgttgatccaaaggtcttttataaatagaatcagagagagtactt |
11025500 |
T |
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| Q |
208 |
tctaattac-----aatgatcgtctttatgcttgttttgattggttgtaagagcataatcatgatgagtcactataatttttgcaaaaactacattttag |
302 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11025499 |
tctaattacaatataatgatcgtctttatgcttgttttgattggttgtgagagcataatcatgatgagtcactataattttggcaaaaactacattttag |
11025400 |
T |
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| Q |
303 |
agctttacaaaaccaaggtacccgtgattttggcaatctaaac |
345 |
Q |
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| T |
11025399 |
agctttacaaaaccaaggtacccgtgattttggcaatctaaac |
11025357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 11040403 - 11040348
Alignment:
| Q |
8 |
aaattatactagctagccttagcttatgtcattgattgattgtaaaggatattaat |
63 |
Q |
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|||| |||||||||| | ||||||||||| |||||||||||||||| |||| |||| |
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| T |
11040403 |
aaatcatactagctaacattagcttatgttattgattgattgtaaaagatactaat |
11040348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 12062615 - 12062574
Alignment:
| Q |
149 |
gatacatcatcttttgttgatccaaagatcttttataaatag |
190 |
Q |
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| T |
12062615 |
gatacatcaacttttgttgatcaaaatatcttttataaatag |
12062574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 8186442 - 8186483
Alignment:
| Q |
149 |
gatacatcatcttttgttgatccaaagatcttttataaatag |
190 |
Q |
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| T |
8186442 |
gatacatcaacttttgttgatccaaatttcttttataaatag |
8186483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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