View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_30 (Length: 325)
Name: NF1429_high_30
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_30 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 883899 - 883609
Alignment:
| Q |
20 |
gtcaccaccattattgtttccaaatcaatagaaatattttctctagaaaagatagaagaaatggctgcagcagaaggagtgagtctgaaccatatagctc |
119 |
Q |
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| T |
883899 |
gtcaccaccattattgtttccaaatcaatagaaatattttctctagaaaagatagaagaaatggctgcagcagaaggagtgagtctgaaccatatagctc |
883800 |
T |
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| Q |
120 |
gagagtccaccgacgtaaaaagactctccaaattctaccaagaggttagttagcatttagcctatgaaactcagacactcatcttgtttgataccaacac |
219 |
Q |
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| T |
883799 |
gagagtccaccgacgtaaaaagactctccaaattctaccaagaggttagttagcatttaacctatgaa----------tcatcttgtttgataccaatac |
883710 |
T |
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| Q |
220 |
agcacttacacatataatcacattgaattatgtaactttttaaaattattatttgtatcgattgtctaatgttcgtgtatgtgttcctgcttcatctcac |
319 |
Q |
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| T |
883709 |
aacactgacaaatgtagtcacattgaattatgtaactttttaaaattattatttgtatcgattgtctaatgttcgtgtatgtgttcatgcttcatatcac |
883610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 38749571 - 38749615
Alignment:
| Q |
227 |
acacatataatcacattgaattatgtaactttttaaaattattat |
271 |
Q |
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| T |
38749571 |
acacatataattacattgaattatgtcattttttcaaattattat |
38749615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 99944 - 99900
Alignment:
| Q |
227 |
acacatataatcacattgaattatgtaactttttaaaattattat |
271 |
Q |
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| T |
99944 |
acacatataattacattgaattatgttattttctaaaattattat |
99900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 3677835 - 3677783
Alignment:
| Q |
229 |
acatataatcacattgaattatgtaactttttaaaattattatttgtatcgat |
281 |
Q |
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| T |
3677835 |
acatataattacatagaattatgtgattttttaaaattattaattgtgtcgat |
3677783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 18013077 - 18013125
Alignment:
| Q |
222 |
cacttacacatataatcacattgaattatgtaactttttaaaattatta |
270 |
Q |
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| T |
18013077 |
cactgacacatataattacactgaattatgtaatttttttaaattatta |
18013125 |
T |
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