View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_31 (Length: 314)
Name: NF1429_high_31
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 34685657 - 34685348
Alignment:
| Q |
1 |
ctgctggtaataatatagttgtgtgtgtgttgagaagtgaacggctgcaacacaattttggtcat--------agatgtataagatgtatggaatcacat |
92 |
Q |
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| T |
34685657 |
ctgctggtaataatatagttgtgtgtgtgttgagaagtgaacggttgcaacacaattttggtcattcatgtgtagatgtataagatgtatggaatcacat |
34685558 |
T |
|
| Q |
93 |
tttagaattcaaattattgctgaattttagttaaatttgaattgattgagagtgtcccaatttaaatatgaccggaaccatcataagttgaataagttta |
192 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34685557 |
gttagaattcaagttattgctgaattttagttaaagttgaattgattgagagtgtcccaatttaaatatgaccggaaccatcataagttgaataagttta |
34685458 |
T |
|
| Q |
193 |
gttgaactatggcaactccattggggaatagtggactgaaataaatgaataaaaaacatgagtannnnnnnncct--aagagaaaaatatgagtataatt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
34685457 |
gttgaactatggcaactccattggggaatagtggactgaaataaatgaataaaaaacatgagtatttttttttctgagagagaaaaatatgagtataatt |
34685358 |
T |
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| Q |
291 |
aaagaggagt |
300 |
Q |
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|||||||||| |
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| T |
34685357 |
aaagaggagt |
34685348 |
T |
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