View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_34 (Length: 284)
Name: NF1429_high_34
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 8787820 - 8788076
Alignment:
| Q |
11 |
cacagatcggtcaatctgggtagtgagtcgctaggacaaagttcacgttttaagcaaaattcactagtttctgatccggcatttgnnnnnnntaatgaac |
110 |
Q |
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| T |
8787820 |
cacagattggtcaatctgggtagtgagtcgctaggacaaatttcatgttttaagcaaaattcactagtttctgatccggcatttgaaaaaaataatgaac |
8787919 |
T |
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| Q |
111 |
taatccttaattctgcgacgagtgttgatggtgataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggatgggggtaattgctc |
210 |
Q |
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| T |
8787920 |
taatccttaattctgcgacgattgttgatggtgataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggatgggggtaattgctc |
8788019 |
T |
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| Q |
211 |
cgatccagatgttactattttggaaccttatgaagtttgtgaagatacccctttcgt |
267 |
Q |
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| T |
8788020 |
cgatccagatgttactattttggaaccttatcaagtttgtgaagatacccctttcgt |
8788076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 8782184 - 8782318
Alignment:
| Q |
133 |
tgttgatggtgataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggatgggggtaattgctccgatccagatgttactattttg |
232 |
Q |
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| T |
8782184 |
tgttgacggtgataaggagtatatgcatggtaagagtaccacaaacacatccaaggtggaggatgggggtattccctccgatccagatgtaactattttg |
8782283 |
T |
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| Q |
233 |
gaaccttatgaagtttgtgaagatacccctttcgt |
267 |
Q |
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| T |
8782284 |
aaatcttatccaatttgtgaagctaaccctttcgt |
8782318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 8782055 - 8782124
Alignment:
| Q |
127 |
gacgagtgttgatggtgataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggat |
196 |
Q |
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| T |
8782055 |
gacgattgttgatggtgataaggagtatatccgtggtaagaataccaaaaacacatccaaggtggaggat |
8782124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 8787660 - 8787736
Alignment:
| Q |
19 |
ggtcaatctgggtagtgagtcgctaggacaaagttcacgttttaagcaaaattcactagtttctgatccggcatttg |
95 |
Q |
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| T |
8787660 |
ggtcaacctgggcagtgagtcactaggacaaaattcaagtgataagcaaaattcactattttctgatcccgcatttg |
8787736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 267
Target Start/End: Original strand, 8776166 - 8776328
Alignment:
| Q |
105 |
atgaactaatccttaattctgcgacgagtgttgatggtgataaggagtatatgagttgtaagaataccacaaacacacccacggtggaggatgggggtaa |
204 |
Q |
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| T |
8776166 |
atgaacaattccttaattctgtgacgattgttgatgacgataaggagtattttcgtgacaagaataccaccaacacatccaatgtggaggatgagaataa |
8776265 |
T |
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| Q |
205 |
ttgctccgatccagatgttactattttggaaccttatgaagtttgtgaagatacccctttcgt |
267 |
Q |
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| T |
8776266 |
ttcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttcgt |
8776328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 8781981 - 8782045
Alignment:
| Q |
11 |
cacagatcggtcaatctgggtagtgagtcgctaggacaaagttcacgttttaagcaaaattcact |
75 |
Q |
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| T |
8781981 |
cacagattggttaatctaggtagtgagtcactaggaaaaagttcaagtgttaagcgaaattcact |
8782045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 8782124 - 8782172
Alignment:
| Q |
31 |
tagtgagtcgctaggacaaagttcacgttttaagcaaaattcactagtt |
79 |
Q |
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| T |
8782124 |
tagtgagtcactaggacaaagttcaagtgttaagcgaaattcactagtt |
8782172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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