View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1429_high_43 (Length: 248)

Name: NF1429_high_43
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1429_high_43
NF1429_high_43
[»] scaffold0170 (2 HSPs)
scaffold0170 (1-95)||(4578-4672)
scaffold0170 (179-237)||(4680-4738)
[»] chr3 (5 HSPs)
chr3 (1-54)||(20661790-20661843)
chr3 (1-53)||(54432864-54432916)
chr3 (1-53)||(12710175-12710227)
chr3 (1-53)||(23206910-23206962)
chr3 (1-53)||(40943009-40943061)
[»] chr7 (15 HSPs)
chr7 (1-53)||(10618136-10618188)
chr7 (1-53)||(17025970-17026022)
chr7 (1-53)||(26215832-26215884)
chr7 (1-53)||(26719257-26719309)
chr7 (1-53)||(33899578-33899630)
chr7 (1-53)||(35544142-35544194)
chr7 (1-55)||(45054908-45054962)
chr7 (8-57)||(22074683-22074732)
chr7 (4-53)||(45174732-45174781)
chr7 (1-53)||(3931321-3931373)
chr7 (1-29)||(8110874-8110902)
chr7 (1-53)||(18250619-18250671)
chr7 (9-53)||(18740832-18740876)
chr7 (1-53)||(41449262-41449314)
chr7 (1-53)||(42071635-42071687)
[»] chr5 (5 HSPs)
chr5 (1-53)||(13937226-13937278)
chr5 (1-53)||(27195538-27195590)
chr5 (1-55)||(4983936-4983990)
chr5 (8-54)||(17198316-17198362)
chr5 (1-55)||(41782809-41782863)
[»] chr8 (3 HSPs)
chr8 (1-53)||(39477532-39477584)
chr8 (1-51)||(12377836-12377886)
chr8 (1-55)||(43966997-43967051)
[»] chr1 (7 HSPs)
chr1 (1-53)||(15257819-15257871)
chr1 (1-53)||(24575415-24575467)
chr1 (10-49)||(47982784-47982823)
chr1 (1-47)||(3577053-3577099)
chr1 (1-55)||(43090003-43090057)
chr1 (1-53)||(7955764-7955816)
chr1 (1-53)||(40160277-40160329)
[»] chr4 (8 HSPs)
chr4 (3-53)||(38791127-38791177)
chr4 (8-53)||(12673640-12673685)
chr4 (8-57)||(22720848-22720897)
chr4 (1-50)||(40797269-40797318)
chr4 (1-53)||(21436422-21436474)
chr4 (1-53)||(44377720-44377772)
chr4 (1-53)||(49820493-49820545)
chr4 (1-45)||(50711422-50711466)
[»] chr2 (3 HSPs)
chr2 (1-55)||(2647571-2647625)
chr2 (1-53)||(33830993-33831045)
chr2 (9-53)||(44741269-44741313)
[»] scaffold0444 (1 HSPs)
scaffold0444 (1-53)||(1386-1438)
[»] chr6 (2 HSPs)
chr6 (9-53)||(3082304-3082348)
chr6 (1-53)||(13311463-13311515)


Alignment Details
Target: scaffold0170 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 4578 - 4672
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttcattaggtttatttcggtagatcgaataacataattaaaaggcc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||    
T  4578 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttcattagggttagttcgctagatcgaataacataattaaaaggcc 4672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 4680 - 4738
Alignment:
Q  179 tacaatcatatatttgctttacttcattatgtgcgttgtcgaatcgaatttcagttcat 237  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4680 tacaatcatatatttgctttacttcattatgtgtgttgtcgaatcgaatttcagttcat 4738  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20661790 - 20661843
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttcat 54  Q
    |||||||||||||||||||||||| |||||||| ||| | ||||||||||||||    
T  20661790 gagttcagctcgtttaaagttcacgaacaactcggttcggctcgttaggttcat 20661843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 54432916 - 54432864
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  54432916 gagttcggctcgtttaaaattcacgaacaactcggttcgactcgttaggttca 54432864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12710175 - 12710227
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||| | |||||||| ||| | |||||||||||||    
T  12710175 gagttcggctcgtttaaagttcgcgaacaactcggttcggctcgttaggttca 12710227  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23206962 - 23206910
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||||  || ||| |||||||||||||||    
T  23206962 gagttcggctcgtttaaagttcacgaacagttcggttcgactcgttaggttca 23206910  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40943009 - 40943061
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| |||| |||||||||||| ||| |||| ||| |||||||||||||||    
T  40943009 gagttcggctcatttaaagttcacgaaccactcggttcgactcgttaggttca 40943061  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10618136 - 10618188
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| |||||||||||| | |||||||||||||    
T  10618136 gagttcggctcgtttaaagttcacgaacaactcagttcgcctcgttaggttca 10618188  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17026022 - 17025970
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||| | |||||||| ||| |||||||||||||||    
T  17026022 gagttcggctcgtttaaagttcgcgaacaactcggttcgactcgttaggttca 17025970  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26215832 - 26215884
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||||  || |||||||||||||||||||    
T  26215832 gagttcggctcgtttaaagttcacgaacagttcggtttgactcgttaggttca 26215884  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26719257 - 26719309
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||| |||| ||| |||||||||||||||    
T  26719257 gagttcggctcgtttaaagttcacgaaccactcggttcgactcgttaggttca 26719309  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33899630 - 33899578
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||| |||| ||| |||||||||||||||    
T  33899630 gagttcggctcgtttaaagttcacgaaccactcggttcgactcgttaggttca 33899578  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35544194 - 35544142
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| |||| ||| ||||| |||||||||||||    
T  35544194 gagttcggctcgtttaaagttcacgaacagctcggtttggctcgttaggttca 35544142  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45054908 - 45054962
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttcatt 55  Q
    |||||| ||||||||||||||||| | |||||| ||| | |||||||||||||||    
T  45054908 gagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcatt 45054962  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 22074683 - 22074732
Alignment:
Q  8 gctcgtttaaagttcacaaacaactcagtttgactcgttaggttcattag 57  Q
    ||||||||||| ||||| |||||||| ||| ||||||||||||| |||||    
T  22074683 gctcgtttaaaattcacgaacaactcggttcgactcgttaggtttattag 22074732  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 45174732 - 45174781
Alignment:
Q  4 ttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    ||||||||||||||||||||| ||||| || ||| | |||||||||||||    
T  45174732 ttcagctcgtttaaagttcacgaacaattcggttcggctcgttaggttca 45174781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3931373 - 3931321
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||||||||||||||||||||| ||||  || ||| | |||||||||||||    
T  3931373 gagttcagctcgtttaaagttcacgaacagttcggttcggctcgttaggttca 3931321  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8110874 - 8110902
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaaca 29  Q
    |||||||||||||||||||||||||||||    
T  8110874 gagttcagctcgtttaaagttcacaaaca 8110902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18250671 - 18250619
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||||  || ||| |||||||||||||||    
T  18250671 gagttcggctcgtttaaagttcacgaacagttcggttcgactcgttaggttca 18250619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 18740876 - 18740832
Alignment:
Q  9 ctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||||||||||||| |||||||| ||| | |||||||||||||    
T  18740876 ctcgtttaaagttcacgaacaactcggttcggctcgttaggttca 18740832  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41449262 - 41449314
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||||||||||||||||||||| ||| |||| |||  ||||||||| ||||    
T  41449262 gagttcagctcgtttaaagttcacgaactactcggttcaactcgttagattca 41449314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 42071635 - 42071687
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||||  || ||| |||||||||||||||    
T  42071635 gagttcggctcgtttaaagttcacgaacagttcggttcgactcgttaggttca 42071687  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13937278 - 13937226
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||||||| |||| ||| |||||||||||||||    
T  13937278 gagttcggctcgtttaaagttcacaaaccactcggttcgactcgttaggttca 13937226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27195538 - 27195590
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| |||| ||| |||||| ||||||||||||    
T  27195538 gagttcggctcgtttaaagttcacgaacagctcggtttgattcgttaggttca 27195590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4983990 - 4983936
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttcatt 55  Q
    |||||| ||||||||||||||||| | |||||| ||| | |||||||||||||||    
T  4983990 gagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcatt 4983936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 17198316 - 17198362
Alignment:
Q  8 gctcgtttaaagttcacaaacaactcagtttgactcgttaggttcat 54  Q
    |||||||||||||||||||||||||| |||   ||||||||||||||    
T  17198316 gctcgtttaaagttcacaaacaactcggttcagctcgttaggttcat 17198362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41782809 - 41782863
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttcatt 55  Q
    |||||| ||||||||||||||||| | |||||| ||| | |||||||||||||||    
T  41782809 gagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcatt 41782863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39477532 - 39477584
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||| ||||||||||||| ||| |||||||| |||||||||||||||    
T  39477532 gagttcggcttgtttaaagttcacgaaccactcagttcgactcgttaggttca 39477584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12377836 - 12377886
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggtt 51  Q
    ||||||| ||||||||||||||||||||||||| |||  |||| |||||||    
T  12377836 gagttcatctcgtttaaagttcacaaacaactcggttccactcattaggtt 12377886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43966997 - 43967051
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttcatt 55  Q
    |||||| ||||||||||||||||| | |||||| ||| | |||||||||||||||    
T  43966997 gagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcatt 43967051  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15257871 - 15257819
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||| |||| ||| |||||||||||||||    
T  15257871 gagttcggctcgtttaaagttcacgaaccactcggttcgactcgttaggttca 15257819  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24575415 - 24575467
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| |||||||| ||| | |||||||||||||    
T  24575415 gagttcggctcgtttaaagttcacgaacaactcggttcggctcgttaggttca 24575467  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 47982784 - 47982823
Alignment:
Q  10 tcgtttaaagttcacaaacaactcagtttgactcgttagg 49  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  47982784 tcgtttaaagttcacaaacaactcggttcgactcgttagg 47982823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3577053 - 3577099
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgtta 47  Q
    |||||| ||||||||||||||||| |||||||||||| ||| |||||    
T  3577053 gagttcggctcgtttaaagttcacgaacaactcagttcgacccgtta 3577099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43090057 - 43090003
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttcatt 55  Q
    |||||| ||||||||||||||||| | |||||| ||| | |||||||||||||||    
T  43090057 gagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcatt 43090003  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7955764 - 7955816
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||| |||  ||| |||||||||||||||    
T  7955764 gagttcggctcgtttaaagttcacgaaccacttggttcgactcgttaggttca 7955816  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40160329 - 40160277
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| | ||||||||||||||| ||| |||| ||| |||||||||||||||    
T  40160329 gagttcggttcgtttaaagttcacgaaccactcggttcgactcgttaggttca 40160277  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 38791127 - 38791177
Alignment:
Q  3 gttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||||||||||||||||||| ||||||||| |||  ||| |||||||||    
T  38791127 gttcagctcgtttaaagttcacgaacaactcaatttcgctcattaggttca 38791177  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 12673685 - 12673640
Alignment:
Q  8 gctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    ||||||||||||||| | |||||||| ||| |||||||||||||||    
T  12673685 gctcgtttaaagttcgcgaacaactcggttcgactcgttaggttca 12673640  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 22720848 - 22720897
Alignment:
Q  8 gctcgtttaaagttcacaaacaactcagtttgactcgttaggttcattag 57  Q
    ||||||||||||||||||| |||||| |||  ||||||||| ||||||||    
T  22720848 gctcgtttaaagttcacaagcaactcggttcaactcgttagattcattag 22720897  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40797269 - 40797318
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggt 50  Q
    |||||| | ||||||||||||||| ||| |||||||| ||||||||||||    
T  40797269 gagttcgggtcgtttaaagttcacgaaccactcagttcgactcgttaggt 40797318  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21436422 - 21436474
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||||  || ||||| |||||||||||||    
T  21436422 gagttcggctcgtttaaagttcacgaacagttcggtttggctcgttaggttca 21436474  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44377720 - 44377772
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| |||||||  ||| | |||||||||||||    
T  44377720 gagttcggctcgtttaaagttcacgaacaacttggttcggctcgttaggttca 44377772  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49820493 - 49820545
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||||  |||||| | |||||||||||||    
T  49820493 gagttcggctcgtttaaagttcacgaacagttcagttcggctcgttaggttca 49820545  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50711466 - 50711422
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgt 45  Q
    |||||| ||||||||||||||||||||| |||| ||| |||||||    
T  50711466 gagttcggctcgtttaaagttcacaaaccactcggttcgactcgt 50711422  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2647625 - 2647571
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttcatt 55  Q
    |||||| ||||||||||||||||| | |||||| ||| | |||||||||||||||    
T  2647625 gagttcggctcgtttaaagttcacgagcaactcggttcggctcgttaggttcatt 2647571  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33830993 - 33831045
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||||| || ||| | |||||||||||||    
T  33830993 gagttcggctcgtttaaagttcacgaacaattcggttcggctcgttaggttca 33831045  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 44741313 - 44741269
Alignment:
Q  9 ctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||||||||||||| ||||  || |||||||||||||||||||    
T  44741313 ctcgtttaaagttcacgaacagttcggtttgactcgttaggttca 44741269  T

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Target: scaffold0444 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1438 - 1386
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| |||||||  ||| | |||||||||||||    
T  1438 gagttcggctcgtttaaagttcacgaacaacttggttcggctcgttaggttca 1386  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 3082348 - 3082304
Alignment:
Q  9 ctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    ||||||| |||||||| | |||||||||| |||||||||||||||    
T  3082348 ctcgttttaagttcacgagcaactcagttcgactcgttaggttca 3082304  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13311463 - 13311515
Alignment:
Q  1 gagttcagctcgtttaaagttcacaaacaactcagtttgactcgttaggttca 53  Q
    |||||| ||||||||||||||||| ||| ||||  || |||||||||||||||    
T  13311463 gagttcggctcgtttaaagttcacgaaccactcgattcgactcgttaggttca 13311515  T

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