View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_44 (Length: 246)
Name: NF1429_high_44
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 44267006 - 44267236
Alignment:
| Q |
1 |
aaactattttcagcttctctctataagttgttcatgataatttgtgaaaacagtttggctatannnnnnn-attatagaaataacttatacataagcagt |
99 |
Q |
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| T |
44267006 |
aaactattttcagcttctctctataagttgttcatgataatttgtgaaaacagtttggctatattttttttattatagaaataacttatacataagcagt |
44267105 |
T |
|
| Q |
100 |
tatatatgcgcttatgcaatagtaaacatttaattaagttgtttatccaatgtagtcttttatattagaattagagaaatcacactagttttggcaatca |
199 |
Q |
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| T |
44267106 |
tatatatgcgcttatgcaatagtaaacatttaattaagttgtttatccaatgtagtcttttatattagaattagagaaatcacactagttttggcaatca |
44267205 |
T |
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| Q |
200 |
acacttgccacaaaatgatggaaactggaag |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44267206 |
acacttgccacaaaatgatggaaactggaag |
44267236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 5133733 - 5133655
Alignment:
| Q |
72 |
ttatagaaataacttatacataagcagttat-atatgcgcttatgcaatagtaaacatttaattaagttgtttatccaa |
149 |
Q |
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||||||||||| |||||||||||||| ||| ||| | |||||||| ||| |||||| ||||||||| ||||||||||| |
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| T |
5133733 |
ttatagaaatagcttatacataagcaaatatgataagtgcttatgctataataaacacttaattaagctgtttatccaa |
5133655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 32843423 - 32843456
Alignment:
| Q |
71 |
attatagaaataacttatacataagcagttatat |
104 |
Q |
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| T |
32843423 |
attatagaaataacttatacataagcacttatat |
32843456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 33068670 - 33068747
Alignment:
| Q |
72 |
ttatagaaataacttatacataagcagttat---atatgcgcttatgcaatagtaaacatttaattaagttgtttatccaa |
149 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||| |||||||||| | |||||| ||||||||| |||| |||||| |
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|
| T |
33068670 |
ttatagaaataacttatacataagcatttatttgataagcgcttatgcta---taaacacttaattaagctgttcatccaa |
33068747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 9843774 - 9843807
Alignment:
| Q |
71 |
attatagaaataacttatacataagcagttatat |
104 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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|
| T |
9843774 |
attatagaaatagcttatacataagcagttatat |
9843807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 19422379 - 19422347
Alignment:
| Q |
72 |
ttatagaaataacttatacataagcagttatat |
104 |
Q |
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|
| T |
19422379 |
ttatagaaataacttatacataagcatttatat |
19422347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 24158611 - 24158643
Alignment:
| Q |
72 |
ttatagaaataacttatacataagcagttatat |
104 |
Q |
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|
|||||||||||||||||||||||||| |||||| |
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|
| T |
24158611 |
ttatagaaataacttatacataagcacttatat |
24158643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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