View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1429_high_49 (Length: 237)
Name: NF1429_high_49
Description: NF1429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1429_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 327829 - 327602
Alignment:
| Q |
1 |
tccaactttctgtaaattacttcattttgccgtttcattgctaggaatctccaaaagc-------cacgcacaggggaggaaagtggtatcgagagaaga |
93 |
Q |
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| T |
327829 |
tccaactttctgtaaattacttcattttgccgtttcattgctaggaatctccaaaagcgtgtggtcacacacaggggaggaaagtggtatcgagagaaga |
327730 |
T |
|
| Q |
94 |
ggcagtcatgtgaatcaaagatgcggttgatgccagaaatgagagtggatctgatattgtgattgtggctcgcaccgatgcgcgccaagccctgtctctt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
327729 |
ggcagtcatgtgaatcaaagatgcggttgatgccagaaatgagagtggatctgatattgtgattgtggctcgcaccgatgcgcgccaagccctgtctctt |
327630 |
T |
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| Q |
194 |
gatgaggcactctataggtcaaggacat |
221 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
327629 |
gatgaggcactctataggtcaaggacat |
327602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 620767 - 620990
Alignment:
| Q |
1 |
tccaactttctgtaaattacttcattttgccgtttcattgctaggaatctccaaaagc-------cacgcacaggggaggaaagtggtatcgagagaaga |
93 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
620767 |
tccaactttctgtaaattacttcattttgctgtttcattgctaggtatctccaaaagcgtgtggtcacacacaggggaggaaagtggtatcgagagaaga |
620866 |
T |
|
| Q |
94 |
ggcagtcatgtgaatcaaagatgcggttgatgccagaaatgagagtggatctgatattgtgattgtggctcgcaccgatgcgcgccaagccctgtctctt |
193 |
Q |
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| T |
620867 |
ggcagtcatgcgaatcaaagctgcggttgatgccagaaatgagagtggatctgatattgtgattgtggctcgcaccgatgcgcgccaagccctgtctctt |
620966 |
T |
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| Q |
194 |
gatgaggcactctataggtcaagg |
217 |
Q |
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| T |
620967 |
gatgaggcactctataggtcaagg |
620990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 528434 - 528566
Alignment:
| Q |
72 |
ggaaagtggtatcgagagaagaggcagtcatgtgaatcaaagatgcggttgatgccagaaatgagagtggatctgatattgtgattgtggctcgcaccga |
171 |
Q |
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|||||||||| |||||||| ||||| || ||| |||| |||| || |||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
528434 |
ggaaagtggtgtcgagagaggaggcggttatgagaattaaagcggcagttgatgctagaagtgagagtggatctgatattgtgattgtggctcgcagcga |
528533 |
T |
|
| Q |
172 |
tgcgcgccaagccctgtctcttgatgaggcact |
204 |
Q |
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||| ||||||| | |||||||||| |||||||| |
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| T |
528534 |
tgcacgccaaggcgtgtctcttgaagaggcact |
528566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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